Family: SNORD43

CLUSTAL W (1.83) multiple sequence alignment A_thaliana300173 -----------------AACAAT-GATGAGATATTAGCAGACGGGCGGTC A_thaliana300174 -----------------AACAAT-GATGAGATACTTGCAGACGGGCGGTC C_familiaris300086 ----------------CACAGAT-GATGAA---CTTTCTGACGGGCGGAC C_porcellus300832 ----------------CACAAAT-GATGAA---CTTATTGACGGGCGGAC E_telfairi300865 ----------------CACAAGT-GATGAG---CCTATTGACGGGCGGAC E_caballus300020 ----------------CGCAGGT-GATGAG---CTTATTGACGGGCGGAC E_europaeus300674 ----------------CACAGAT-GATGAAC--AATTTTGACGGGCGGAC F_catus300233 ----------------CACAGAT-GATGAA---CTTATTGACGGGCGGAC G_gorilla301052 -----------------ACAGAT-GATGAA---CTCATTGACAGGCATAC G_gorilla300373 ----------------CACAGAT-GATGAA---CTTATTGACGGGCGGAC G_gorilla300486 ----------------AACAGAT-GATGAA---ATTATTGATGGGTGGAC H_sapiens300686 ----------------CACAGAT-GATGAA---CTTATTGACGGGCGGAC L_africana300493 ----------------CACAGAT-GATGAG---CCTATTGACGGGCGGAC M_mulatta300205 -----------------ACAGAT-GATGAA---CTTATTGATGGGTGGAC M_mulatta300241 ----------------AATGGAT-GATGAA---ATTATTGATGGGTGGAT M_mulatta300256 ----------------CACAGAT-GATGAA---CTTATTGACGGGCGGAC M_mulatta300653 ----------------AACAGAT-GATGAA---CTCATTGACAGGCATGC M_murinus300212 -----------------ACAGGT-GATGAA---CTTATTGATGGGTAGAC M_murinus300569 ----------------CACAGGT-GATGAA---CTTACTGACGGGCGGAC M_domestica300019 ----------------TACACGT-GATGAA---ATCTATGACGGGCGGAC M_musculus300858 ----------------CACAAAT-GATGAA---CCTTTTGACGGGCGGAC M_lucifugus300141 ----------------CACAGAT-GATGAA---CTTGTTGACGGGCGGAC O_anatinus303675 ----------------TACAAGT-GATGAG---ACCCTTGACGGGCGGAC O_garnettii300550 ----------------CACAGGT-GATGAA---CTCATTGACGGGCGGAC O_garnettii300181 -----------------TCAAACAGATGAA---CTCATTGATGGGCAGAC O_garnettii300350 ----------------AACAGGT-GATGAA---CTCATTGATGGGTGGAC O_garnettii300117 ----------------AACAGAT-GATGAA---CTCATTGATGGGCAGAC P_troglodytes300619 ----------------CACAGAT-GATGAA---CTTATTGACGGGCGGAC P_troglodytes300665 -----------------ACAGAT-GATGAA---CTCATTGACAGGCATAC P_pygmaeus300148 ----------------CACAGAT-GATGAA---CTTATTGACGGGCGGAC P_pygmaeus300314 ----------------AACGGAT-GATGAA---ATTATTGATGGGTGGAC P_pygmaeus300418 ----------------CACAGAT-GATGAA---CTTATTGACGGGCGGAC P_pygmaeus300737 -----------------ACAGAT-GACGAA---CTCATTGACAGGCATAC R_norvegicus300512 ----------------CACAAAT-GATGAA---CCCTTTGATGGGTGGGC R_norvegicus300574 ----------------CACAAAT-GATGAA---TCCTTTGACGGGCGGGC S_tridecemlineatus300064 ----------------CTCACAT-GATGAA---CTTATTGACGGGCGGAC T_belangeri300003 ----------------CACACAT-GATGAA---GTTGTTGATGGGTGGAC T_belangeri300027 ----------------AGAAGAT-GATAAA---CTTACTATTGGGTGAAC T_belangeri300246 ----------------CACACAT-GATGAA---GTTGTTGATGGGTGGAC T_belangeri300348 ----------------AGAAGAT-GATAAA---CTTACTATTGGGTGAAC T_belangeri300425 ----------------CACATGT-GATGAA---CTTATTGACGGGCGGAC M_murinus300247 ----------GTAGGCAGCCTTT-GATGAAG--CCTG-TGTTGG-----T M_murinus300275 -----------------GCCTCT-GATGAAA--CCTA-TGTTGG-----T M_domestica300035 ----------CCTTGCTGTGTGT-GATGAAA--GTAA-CGTTGG-----T M_musculus300795 ---------GTG-TTCATGCTAT-GATGAAG--GCTA-TGTTGG-----T M_lucifugus300013 ----------GTGCCCTGCCTCT-GATGAAG--CTTA-TGTTGG-----T M_lucifugus300481 ------------TTTACCCCTCT-GATGAAG--CTTA-TGTTGG-----T O_anatinus303448 ----------TGCCCTTACCTGT-GATGAAA--ACAAGTGTTGG-----T O_anatinus304430 ----------TGCCCCTACCTGT-GATGAAA--ACAAGTGTTGG-----T O_garnettii300005 ----------GTGCCCTGCCTCT-GATGAAG--CCCA-TGTTGG-----T O_garnettii300146 -------------------------TTCAAG--CCTT-GGTTGG-----T O_garnettii300429 --------------TTAGCCTCT-GATGGAG--CCTA-TGTTAG-----T O_garnettii300439 ----------TCTTGTCACCTCT-GACGAAG--CCCA-TGTTGG-----T O_garnettii300609 ----------GAAATTGGCTTCT-AATGTAG--CCCA-TTTTAG-----T P_troglodytes300181 ----------GTGCCCTGCCTCT-GATGAAG--CCTG-TGTTGG-----T P_troglodytes300499 ----------ACAAACAGCCTCT-GATGAAA--TTTA-TCTTGA-----T P_troglodytes300564 ----------TTGATCTACCTCT-GATGAAA--CCTG-TGTTGG-----T P_troglodytes300652 ---------------CAGCCTTT-GAGGAAG--CCTG-TGTTTG-----T P_troglodytes300083 ------------------TTTCT-GATGAAG--CCTA-TGTTGG-----T P_troglodytes300098 ----------CAGTCCAGCCTCT-GATGAAG--CCTA-TGTTAG-----T P_troglodytes300132 ----------GAAAACAGTTTCT-GATGAAG--CCTA-TGTTGG-----T P_pygmaeus300015 ------------------TTTCT-GATGAAG--CCTA-TGTTGG-----T P_pygmaeus300122 ----------ATGTGATGCCTCT-GATGAAG--CCTA-TGTTAG-----T P_pygmaeus300380 ----------GGAAACAGTTTCT-GATGAAG--CCTA-TGTTGGGTTGGT P_pygmaeus300449 ----------ACAAACAGCCTCT-GATGAAA--CTTA-TCTTGA-----T P_pygmaeus300568 ----------GTGCCCTGCCTCT-GATGAAG--CCTG-TGTTGG-----T P_pygmaeus300670 ----------TTGATCTACCTCT-GATGAAA--CCTG-TGTTGG-----T P_pygmaeus300652 ---------------CAGCCTTT-GAGGAAG--CCTG-TGTTTG-----T R_norvegicus300164 ---------GTGACTCTTGCAAT-GATGAAG--GTTA-TGTTGG-----T S_cerevisiae300000 TTGTATGATGAGGAACCAGATAGGGACAACAGATTCTCAAGTGACGAGGA S_tridecemlineatus300228 ---------------ATGCCTGG-GATGAAG--CCTG-TGTTGG-----T T_nigroviridis300013 ----------CCCATGAATACAT-GATGAAA--A-AAGTGTTGG-----T T_belangeri300048 ----------AAGAAGAACCTCT-GATGAAG--CCTG-TGGTGG-----T T_belangeri300149 ----------TTCCCCTGCCTCT-GATGAAG--CCTG-TGTTGG-----T X_tropicalis300043 -----------ATGCCTGAGAAT-GATGAAA--ATTA-TGTTGG-----T A_thaliana300173 TGAA--TTGATGCCGTGT-------AGATTGT--CTGCCAT-CGCTACTA A_thaliana300174 TGAAA-TTGATGTCGTGT-------TGATTGT--CTGCCAT-AAGCTACA C_familiaris300086 AGAT-------CCTCTG--------TGCTGAT---TGTCA--CGTTCTGA C_porcellus300832 AGA-------GACTGTG--------TGCTGAT---TGTCA--AGTTCTGA E_telfairi300865 AGAGG------ACTCTG--------TGCTGAT---TGTCAA-TATTCTGA E_caballus300020 AGAG-------ACTCTG--------TGCTGAT---TGTCA--CGTTCTGA E_europaeus300674 AGA-------GACTCCG--------TGTTGAT---TGTCA--AGTTCTGA F_catus300233 AGA-------GACTCTG--------TGCTGAT---TGTCA--TGTTCTGA G_gorilla301052 AGA-------GACTGTG--------TGCTGAT---TGTCA--TGTTCTGA G_gorilla300373 AGA-------AACTGTG--------TGCTGAT---TGTCA--TATTCTGA G_gorilla300486 AAA-------AACTGCT--------GATTGTC--ATGTCA--TGTTCTGA H_sapiens300686 AGA-------AACTGTG--------TGCTGAT---TGTCA--CGTTCTGA L_africana300493 AGAGA------ACGCTG--------TGCTGAT---TGTCAA-TGTTCTGA M_mulatta300205 AGA-------GATAGTG--------TGCTAAC---TGTCA--TGTTCTGA M_mulatta300241 AAA-------AACTGTG--------TGCTGAT---TGTCA--TGTTCTGA M_mulatta300256 AGA-------AACTGTG--------TGCTGAT---TGTCA--TGTTCTGA M_mulatta300653 AGA-------GACTGTG--------TGCTGAT---TGTCA--TGTTCTGA M_murinus300212 AGAG-------ACACTG--------TGCTGAT---TGTCA--AGTTCTGA M_murinus300569 AGA-------GACACTG--------TGCTGAT---TGTCA--CGTTCTGA M_domestica300019 AGAGA-----AAACACG--------TGCTGAA---CGTCA--TATTCTGA M_musculus300858 AGA-------AACTCTG--------TGCTGAA---TGTCA--AGTTCTGA M_lucifugus300141 AGA-------GACTCTG--------TGCTGAT---TGTCA--TGTTCTGA O_anatinus303675 ATAGGAAACCGCCTCTGGCGCTTGATGCTGAT---TGTCA--AGTTCTGA O_garnettii300550 AGAG-------ACGCTG--------TGCTGAT---CGTCA--TGTTCTGA O_garnettii300181 AGAG-------AC--TG--------TGCTGAT---TGTCA--TGTTCTGT O_garnettii300350 AGAG-------GC--TG--------TGCTGAT---TGTCA--TGTTCTGA O_garnettii300117 ATAG-------GC--TG--------TGCTGAT---TGTCA--TGTTCTGT P_troglodytes300619 AGA-------AACTGTG--------TGCTGAT---TGTCA--CGTTCTGA P_troglodytes300665 AGA-------GACTGTG--------TGCTGAT---TGTCA--TGTTCTGA P_pygmaeus300148 AGA-------AACTGTG--------TGCTGAT---TGTCA--TGTTCTGA P_pygmaeus300314 AAA-------AACTGCT--------GATTGTC--ATGTTC--TGATTT-- P_pygmaeus300418 AGA-------AACTGTG--------TGCTGAT---TGTCA--TGTTCTGA P_pygmaeus300737 AGA-------GACTGTG--------TGCTGAT---TGTCA--TGTTCTGA R_norvegicus300512 AGA-------AAC-----------ATGCTGAT---TGTCA--TGTTCTGA R_norvegicus300574 AGA-------ATCTCTG--------TGCTGAT---TGTCA--TGTTCTGA S_tridecemlineatus300064 AGA-------ATCTGTG--------TGCTGAT---TGTCA--TGTTCTGA T_belangeri300003 AGA-------GACTATG--------TGCTGTG---TTCTA--ATTTGGGG T_belangeri300027 AGA-------AACTGTG--------TCTTGAT---TGTCA--GGTTCTGA T_belangeri300246 AGA-------GACTATG--------TGCTGTG---TTCTA--ATTTGGGG T_belangeri300348 AGA-------AACTGTG--------TCTTGAT---TGTCA--GGTTCTGA T_belangeri300425 AGA-------GACTGTG--------TGCTGAT---TGTCA--AGTTCTGA M_murinus300247 AAGGA----CACCTGAGG---GTG---AAGT--G-TGGCA--GAGTTAAA M_murinus300275 AGTGA----CATCTGACA---GTGTTAATGAGAA-TGCCAACTGCTCTGA M_domestica300035 AGGGA----CATCTGAGA---TTGCTGATGA-A--TGCCAACGTCTCTGA M_musculus300795 AGGGA----CAACTGAGC---TTGTTGATGA--A-TACCAACGATTCTGA M_lucifugus300013 AGGGA----CATCTGAGA---CTGTTGATGA--A-TGCCAACAGCTCTGA M_lucifugus300481 AGGGA----CATCTGAGG---CTGTTGATGA--A-TGCCAGCAGCTCTGA O_anatinus303448 AGGGA----CATCTGAGA---AAGCTGATGA-A--TGCCAACACAGCTGA O_anatinus304430 AGGGA----CATCTGAGA---AAGCTGATGA-A--TGCCAACACAGCTGA O_garnettii300005 AGGGA----CATCTGAGA---GT--TGATGA--A-TGCCAACTGCTCTGA O_garnettii300146 AGAGA----CATCTGAGA---GTGCTGGAGA--G-TGCCAACGAGTCTAT O_garnettii300429 AGGGG----CATTTGAGA---GTGTTGATGA--A-TGCCCACCCCTCTGA O_garnettii300439 AGGGA----CATCTGAGA---GTCC-AACTC--T-CAGAGTTGGATGAAT O_garnettii300609 AGGGA----CATCTGAGA---GTAAGGGTGA--A-TGTCAATGGAGCTGA P_troglodytes300181 AGGGA----CATCTGAGA---GTAATGATGA--A-TGCCAACCGCTCTGA P_troglodytes300499 AGGGA----CATCTGAAA---GTGTTGATGA--A-TGCCAAGGACTCTGA P_troglodytes300564 GGGGA----CATCTGAGA---GTGTTGATGA--A-TGCCAGTGACTCTGA P_troglodytes300652 AGGGA----CATCTGAGA---GGGTTGATGA--A-TGCCAACGGCTCTGA P_troglodytes300083 AGAGA----CATCTGAGA---GTATTGATGA--A-TGCCAACAGCTTCAA P_troglodytes300098 AGGCA----CATCTG--A---GTGGTAATGA--A-TGCCAGCAGCTCTGA P_troglodytes300132 AGGGA----CAACTAAGG---TTGTTGATGA--A-TGCTAACAGCTCTAA P_pygmaeus300015 AGAGA----CATCTGAGA---GCATTGATGA--A-TGCCAACAGCTTAAA P_pygmaeus300122 AGAGA----CATCTGAGA---GTGTAGATGA--A-TGCCAATGGCCCTCA P_pygmaeus300380 AGGGA----CAACTAAGG---TTGTTGATGA--A-TGCTAACAGCTCTAA P_pygmaeus300449 AGGGA----CATCTGAAA---GTGTTGATGA--A-TGCCAAGGACTCTAA P_pygmaeus300568 AGGGA----CATCTGAGA---GTGATGATGA--A-TGCCAACCGCTCTGA P_pygmaeus300670 GGGGA----CATCTGAGA---GTGTTGATGA--A-TGCCAGTGACTCTGA P_pygmaeus300652 AGGGA----CATCTGAGA---GTGTTGATGA--A-TGCCAACGGCTCTGA R_norvegicus300164 AGGGA----CAACTGACC---TTGTTGATGA--A-TACCAACAATTCTGA S_cerevisiae300000 ACATCTTTTAAAGCCCAGTTTTTAGTAGAGCTTA-GGGCGCCTTTACTGA S_tridecemlineatus300228 AGGGA----CATCTGAAA---GTGCTGATGA--A-TGCCAGTGGCTCTGA T_nigroviridis300013 AGGGA----CATCTGAGAT--AAGGTGAAGA-AA-TGCCAACTCTTCTGA T_belangeri300048 AGGGA----CATCTGAGA---AAACTGATGA--A-TGCCAATGGCTCTGA T_belangeri300149 AGGGA----CATCTGAGA---AAACTGATGA--A-TGCCAACGGCTCTGA X_tropicalis300043 AGGGA----CATCTGAGA---GCAGTGATGA-T--TACCAACGTCTCTGA A_thaliana300173 -TGTAGCTTCTCTGAGT--------------------------------- A_thaliana300174 -TAAGCATTCTCTGAGT--------------------------------- C_familiaris300086 -TTTG--------------------------------------------- C_porcellus300832 -TTTG--------------------------------------------- E_telfairi300865 -TCTG--------------------------------------------- E_caballus300020 -TGTG--------------------------------------------- E_europaeus300674 -CCTG--------------------------------------------- F_catus300233 -TTTG--------------------------------------------- G_gorilla301052 -CTTA--------------------------------------------- G_gorilla300373 -TTTG--------------------------------------------- G_gorilla300486 -TTT---------------------------------------------- H_sapiens300686 -TT----------------------------------------------- L_africana300493 -TGGG--------------------------------------------- M_mulatta300205 -TTTT--------------------------------------------- M_mulatta300241 -TTT---------------------------------------------- M_mulatta300256 -TTTG--------------------------------------------- M_mulatta300653 -TTT---------------------------------------------- M_murinus300212 -CTCA--------------------------------------------- M_murinus300569 -TTTG--------------------------------------------- M_domestica300019 TGGT---------------------------------------------- M_musculus300858 -TTTG--------------------------------------------- M_lucifugus300141 -TTTG--------------------------------------------- O_anatinus303675 ATGTA--------------------------------------------- O_garnettii300550 -TTTG--------------------------------------------- O_garnettii300181 -TGT---------------------------------------------- O_garnettii300350 -TGTG--------------------------------------------- O_garnettii300117 -TGTG--------------------------------------------- P_troglodytes300619 -TTTG--------------------------------------------- P_troglodytes300665 -CTTA--------------------------------------------- P_pygmaeus300148 -TTTG--------------------------------------------- P_pygmaeus300314 -------------------------------------------------- P_pygmaeus300418 -TTTG--------------------------------------------- P_pygmaeus300737 -CTTA--------------------------------------------- R_norvegicus300512 -TTTG--------------------------------------------- R_norvegicus300574 -TCTG--------------------------------------------- S_tridecemlineatus300064 -TATG--------------------------------------------- T_belangeri300003 -TGTG--------------------------------------------- T_belangeri300027 -TTTG--------------------------------------------- T_belangeri300246 -TGTG--------------------------------------------- T_belangeri300348 -TTTG--------------------------------------------- T_belangeri300425 -TTTGTCTATGAGCTTCTGATGAAGCCTACATTTGTAGGGACATATGAGA M_murinus300247 GGAACCAAC----------------------------------------- M_murinus300275 TGAAAAAAA----------------------------------------- M_domestica300035 TGCGGGG------------------------------------------- M_musculus300795 TGGCAGAGC----------------------------------------- M_lucifugus300013 TGGCGGCGC----------------------------------------- M_lucifugus300481 TGGCGAAAA----------------------------------------- O_anatinus303448 GTCGGGGCT----------------------------------------- O_anatinus304430 GTCGGGGCT----------------------------------------- O_garnettii300005 TGGTGGAGC----------------------------------------- O_garnettii300146 GGAAATAA------------------------------------------ O_garnettii300429 TGAAAAAAA----------------------------------------- O_garnettii300439 GCCAACTGCTCTGATGGAAAATA--------------------------- O_garnettii300609 CAAAAAAAT----------------------------------------- P_troglodytes300181 TGGTGGCAC----------------------------------------- P_troglodytes300499 TGGA---------------------------------------------- P_troglodytes300564 TAGAAAAAA----------------------------------------- P_troglodytes300652 TGGAAAAAA----------------------------------------- P_troglodytes300083 TGGAGAAAA----------------------------------------- P_troglodytes300098 TGAAAAAAA----------------------------------------- P_troglodytes300132 CACAC--------------------------------------------- P_pygmaeus300015 TGGGGAAAA----------------------------------------- P_pygmaeus300122 TGGAAAGAG----------------------------------------- P_pygmaeus300380 CACACACAC----------------------------------------- P_pygmaeus300449 TGGA---------------------------------------------- P_pygmaeus300568 TGGTGGCAC----------------------------------------- P_pygmaeus300670 TAGAAAAAA----------------------------------------- P_pygmaeus300652 TGGGAAAAA----------------------------------------- R_norvegicus300164 TGGCAGAGC----------------------------------------- S_cerevisiae300000 CT------------------------------------------------ S_tridecemlineatus300228 TGGTGGTGT----------------------------------------- T_nigroviridis300013 TTTCATGGG----------------------------------------- T_belangeri300048 TGGCAGTAT----------------------------------------- T_belangeri300149 TGGCAG-------------------------------------------- X_tropicalis300043 TCAGGCCAT----------------------------------------- A_thaliana300173 ----------------------------------- A_thaliana300174 ----------------------------------- C_familiaris300086 ----------------------------------- C_porcellus300832 ----------------------------------- E_telfairi300865 ----------------------------------- E_caballus300020 ----------------------------------- E_europaeus300674 ----------------------------------- F_catus300233 ----------------------------------- G_gorilla301052 ----------------------------------- G_gorilla300373 ----------------------------------- G_gorilla300486 ----------------------------------- H_sapiens300686 ----------------------------------- L_africana300493 ----------------------------------- M_mulatta300205 ----------------------------------- M_mulatta300241 ----------------------------------- M_mulatta300256 ----------------------------------- M_mulatta300653 ----------------------------------- M_murinus300212 ----------------------------------- M_murinus300569 ----------------------------------- M_domestica300019 ----------------------------------- M_musculus300858 ----------------------------------- M_lucifugus300141 ----------------------------------- O_anatinus303675 ----------------------------------- O_garnettii300550 ----------------------------------- O_garnettii300181 ----------------------------------- O_garnettii300350 ----------------------------------- O_garnettii300117 ----------------------------------- P_troglodytes300619 ----------------------------------- P_troglodytes300665 ----------------------------------- P_pygmaeus300148 ----------------------------------- P_pygmaeus300314 ----------------------------------- P_pygmaeus300418 ----------------------------------- P_pygmaeus300737 ----------------------------------- R_norvegicus300512 ----------------------------------- R_norvegicus300574 ----------------------------------- S_tridecemlineatus300064 ----------------------------------- T_belangeri300003 ----------------------------------- T_belangeri300027 ----------------------------------- T_belangeri300246 ----------------------------------- T_belangeri300348 ----------------------------------- T_belangeri300425 GTGCTGATGAATGCCAACCCCTGTGATGGGAAAAA M_murinus300247 ----------------------------------- M_murinus300275 ----------------------------------- M_domestica300035 ----------------------------------- M_musculus300795 ----------------------------------- M_lucifugus300013 ----------------------------------- M_lucifugus300481 ----------------------------------- O_anatinus303448 ----------------------------------- O_anatinus304430 ----------------------------------- O_garnettii300005 ----------------------------------- O_garnettii300146 ----------------------------------- O_garnettii300429 ----------------------------------- O_garnettii300439 ----------------------------------- O_garnettii300609 ----------------------------------- P_troglodytes300181 ----------------------------------- P_troglodytes300499 ----------------------------------- P_troglodytes300564 ----------------------------------- P_troglodytes300652 ----------------------------------- P_troglodytes300083 ----------------------------------- P_troglodytes300098 ----------------------------------- P_troglodytes300132 ----------------------------------- P_pygmaeus300015 ----------------------------------- P_pygmaeus300122 ----------------------------------- P_pygmaeus300380 ----------------------------------- P_pygmaeus300449 ----------------------------------- P_pygmaeus300568 ----------------------------------- P_pygmaeus300670 ----------------------------------- P_pygmaeus300652 ----------------------------------- R_norvegicus300164 ----------------------------------- S_cerevisiae300000 ----------------------------------- S_tridecemlineatus300228 ----------------------------------- T_nigroviridis300013 ----------------------------------- T_belangeri300048 ----------------------------------- T_belangeri300149 ----------------------------------- X_tropicalis300043 -----------------------------------