CLUSTAL 2.0.10 multiple sequence alignment C_intestinalis300003-SNORD111 -TCGATCACAATGATGAAACA---------TTTCATGTCTCTTCTCTGAT C_intestinalis300004-SNORD111 -TCGATCACAATGATGAAACA---------TTTCATGTCTCTTCTCTGAT C_intestinalis300005-SNORD111 -TTGATCACAATGATGAAACA---------TTTCATGTCTCTTCTCTGAT C_savignyi300017-SNORD111 -GTGATTACAATGATGATTTT---------ACACATGTCTCTTCTCTGAT O_latipes300071-SNORD111 ----TTGAGTGTGATGAATTT---------TC-CATGTCTCTTCTCTGAC S_araneus300095-SNORD111 TAGCAAAAAGATGTTTATTTT---------ATTCATGTCTCTTCTCT--T C_porcellus300870-SNORD111 -TAGCCTGAAATGATGCC-----TA---AATTTCATGTCTCTTCTCTGAC O_cuniculus300494-SNORD111 -AAGGCTGAAATGATGACAAT-GTA---AATTTCATGTCTCTTCTCTGAC M_musculus300813-SNORD111 -CAGCCTGAAATGATGACCAT-TTA---A--TTCATGTCTCTTCTCTGAC R_norvegicus300981-SNORD111 -CAGCCTGAAATGATGACTAT-TTA---A--TTCGTGTCTCTTCTCTGAC S_araneus300956-SNORD111 -CAGCCTGACAGGATGATCAT-TTA---AATTTCATGTCTCTTCTCTGAC M_murinus300460-SNORD111 -CAGCCTGAAATGATGACTCTCTTA---AATTTCATGTCTCTTCTCCGAC H_sapiens300593-SNORD111 -CAGCCTGAAATGATGACTCT-TTAAAAAATTTCATGTCTCTTCTCTGAC P_troglodytes300691-SNORD111 -CAGCCTGAAATGATGACTCT-TTAAAAAATTTCATGTCTCTTCTCTGAC P_pygmaeus300753-SNORD111 -CAGCCTGAAATGATGACTCT-TTA---AATTTCATGTCTCTTCTCTGAC M_mulatta300617-SNORD111 -CAGCCTGAAATGATGACTCT-TTA---AATTTCATGTCTCTTCTCAGAC E_europaeus300622-SNORD111 -CAGCCTGAAATGATGATTCT-TTA---AATTTCATGTCTCTTCTCTGAC L_africana300463-SNORD111 -CAGCCTGAAATGATGATTCT-TTA---AATTTCATGTCTCTTCTCTGAC E_telfairi300808-SNORD111 -TAGCCTGAAATGATGATTCT-TCA---AATTTCATGTCTCTTCTCTGAC E_caballus300251-SNORD111 -CAGCCTGAAATGATGATTCT-TTA---CTTTTCATGTCTCTTCTCTGAC M_domestica300137-SNORD111 -TTGCCTGAAATGATGA--TT--------ATTTCATGAATCTTCTCTGAA O_anatinus302177-SNORD111 -TTGCCTGAAATGATGA--CT--------ATTTCATGTCTCTTCTGAGAC O_anatinus302178-SNORD111 -CTGCCTGAAATGATGAGTTC--------ACTTCATGTCTCTTCTCTGAA E_telfairi300427-SNORD111 -CCGCCTGAAATGATGATTCTTCAA----ATTTCATGTCTCTTCTCTGAT H_sapiens300592-SNORD111B -CAGCCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT P_troglodytes300690-SNORD111 -CAGCCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT P_pygmaeus300754-SNORD111 -CAGCCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT C_porcellus300869-SNORD111 -CAGCCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT M_mulatta300618-SNORD111 -CAGCCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT E_telfairi300807-SNORD111 -CGGCCTGAAGTGATGATTAA--------CATTCATGTCTCTTCTCTGAT L_africana300462-SNORD111 -CAGCCTGAAGTGATGACTCA--------CATTCATGTCTCTTCTCTGAT C_familiaris300344-SNORD111 -TAGCCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT S_tridecemlineatus300335-SNORD -CAGC-TGAAGTGATGAT-CA--------CAT-CATGTCTCTTCTCTGAT O_cuniculus300493-SNORD111 -TAGTCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT E_caballus300252-SNORD111 -TGGCCTGAAGTGATGATTCA--------GGTTCATGTCTCTTCTCTGAT R_norvegicus300598-SNORD111 -GGTCCTGAAGTGATGACTCA-----------CAATGTTTCTTCTCTGAT D_novemcinctus300570-SNORD111 -CAGCCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT M_murinus300459-SNORD111 -AAGCCT-AAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT E_europaeus300621-SNORD111 -CAGCCTGAAGTGATGATTTA--------TATTCATGTCTCTTCTCTGAT M_musculus300814-SNORD111 -CAGCCTGAAGTGATGATTCA--------CAATCATGTCTCTTCTCTGAA S_araneus300955-SNORD111 -GGGCCTGAAGTGATGATTCA--------CATTCATGTCTCTTCTCTGAT O_garnettii300500-SNORD111 ---AACTGAAATGATGAGTCA--------CATTCATGTCTCTTCTCTGAT O_garnettii300707-SNORD111 -CAGCCTGAAATGATGAGTCA--------CATTCATGTCTCTTCTCTGAT M_domestica300136-SNORD111 -CAGCCTGAAATGATGATTCA--------CATTCATGTCTCTTCTCTGAG O_anatinus302176-SNORD111 -AGGCCTGGAATGATGATCCA--------GATTCATGTCTCTTCTCTGAG D_rerio300139-SNORD111 -GTGCCAGAAATGATGATTAT---------CTTCATGTCTCTTCTCTGA- D_rerio300140-SNORD111 -GTGCCAGAAATGATGAATAT---------CTTCATGTCTCTTCTCTGA- D_rerio300137-SNORD111 -CTGTCA-AAATGATGAATAT---------CTTCATGTCTCTTCTCTGA- D_rerio300138-SNORD111 --TAATG-AAATGATGAGC-T---------TTTCATGTCTCTTCTCTGA- X_tropicalis300041-SNORD111 -GCAACA-AAGTGATGAG--T---------TTTCATGTCTCTTCTCTGAG O_latipes300075-SNORD111 GCTGCAG-AAGTGATGAGC-T---------CTTCATGTCTCTTCTCTGA- T_rubripes300039-SNORD111 GCTGTAG-AAGTGATGAGC-T---------CTTCATGTCTCTTCTCTGAC O_latipes300076-SNORD111 TCTGCAG-AAATTATGAGT-T---------TTTCATGTCTCTTCTCTGAT P_pygmaeus300193-SNORD111 --TTTCCAGAATTATGGGTTT-----GACAAACCAAAACACTCATTATTT P_pygmaeus300301-SNORD111 --TTTCCAGAATTATGGGTTT-----GACAAACCAAAACGCTCATTATTT * ** * C_intestinalis300003-SNORD111 TAAGAA----TGAAAG---ATATTTTTAT-TAT----TCTGAGTGATCAA C_intestinalis300004-SNORD111 TAAGAA----TGAAAG---ATATTTTTAT-TAT----TCTGAGTGATCAA C_intestinalis300005-SNORD111 AAAGAA----TGAAAG---ATATTTTTAT-TAT----TCTGAGTGATCTA C_savignyi300017-SNORD111 TAAAAA----TGAAACGATACATTTTTATACTT----TCTGAGTAATCAC O_latipes300071-SNORD111 TGTTAC----TGGAGA---AAGATTTGAT---T----TCTGATC--TCAG S_araneus300095-SNORD111 TACTGC----TTGTAT---ATTTTTCTTTTCATG---TCTGAACATGCCA C_porcellus300870-SNORD111 AATTTT--GTCTGGAGATGGTT-TTTGCCTTATTGA-TCTGATCAGGCTG O_cuniculus300494-SNORD111 ATTTTC--CTCTGGAGATAGTT-TCTGCCTCACTGG-TCTGATCAGGCTG M_musculus300813-SNORD111 ATTCTC--CTCTGGAGATGATT-TTTGCCTTATTGA-TCTGATCAGGCTG R_norvegicus300981-SNORD111 ATTCTC--CTCTGGAGATGATT-TTTGCCTTGCTGA-TCTGATGAGGCTG S_araneus300956-SNORD111 ATTGTT--CTTTGGAGAT-ATT-CATGCCTTATTGA-TCTGATCAGGTTG M_murinus300460-SNORD111 ATTTTT--CTGTGGAGATAGCT-TTTGCCTTATTGA-TCTGATCAGGCTA H_sapiens300593-SNORD111 ATTTTT--CTCTGGACACAGTT-TTTGCCTTATGAA-TCTGATCAGGCTG P_troglodytes300691-SNORD111 ATTTTT--CTCTGGAGACAGTT-TTTGCCTTATGAA-ACTGATCAGGCTG P_pygmaeus300753-SNORD111 ATTTTT--CTCTGGAGACAGTT-TTTGCCTTATGGA-TCTGATCAGGCTG M_mulatta300617-SNORD111 ATTTTT--CTCTGGAGATAATT-TTTGCCTTATGGA-TCTGATCAGGCTG E_europaeus300622-SNORD111 AT--TT--CTCTGGAGATAGTT-TTTGCCTTACTGT-TCTGATCAGGCTG L_africana300463-SNORD111 ATGTTT--CTCTGGAGATACTG-CTTGCCTTACTGA-TCTGATCAGGCTG E_telfairi300808-SNORD111 ATGTTT--CTCTGGAGATAATT-CTTGCCTTACTGA-TCTGATCAGGCTG E_caballus300251-SNORD111 GTTTTT--CTCTGGAGATAGTT-CTTGCCTTAC-AA-TCTGATCAGGCTG M_domestica300137-SNORD111 ACTTTTTTCTCTGAAGACAAAAACTTACCTCTCTGAATCTGATCGGGCAC O_anatinus302177-SNORD111 TCCTGAAGCTCTGGAGATAGCA-CTTACCTCT------CTGATCAGGCAT O_anatinus302178-SNORD111 ATCTT---CCCTGGAGACACAA-TTAACCTCGCTGA-TCTGATCAGGCTG E_telfairi300427-SNORD111 ATGTTT--CTCTGAAGATA-CATTTCGCCATACTGA-TCTGATCAGGCTA H_sapiens300592-SNORD111B AAAT-T---CTTGAAGAAAATT-TTTGTGT------GTCTGATCAGGCCT P_troglodytes300690-SNORD111 AAAT-T---CTTGAAGAAAATT-TTTGTGT------GTCTGATCAGGCCT P_pygmaeus300754-SNORD111 AAAT-T---CTTGAAGAAAATT-TT-GTGT------GTCTGATCAGGCCT C_porcellus300869-SNORD111 AAAT-T----TTGAAGAAAATT-CT-GTGT------GTCTGATCAGGCTT M_mulatta300618-SNORD111 AAAT-T---TTTGAAGACAATT-TT-GTGT------ATCTGATCAGGCCT E_telfairi300807-SNORD111 AAATGT---CTTGAAGATAATG-TT-GTG-------ATCTGACCAGGCCT L_africana300462-SNORD111 GGATGT---CTTGAAGAAATTT-TT-GTGT------ATCTGACCAGGACT C_familiaris300344-SNORD111 AAATCT---TTTGAAGGAAATT-CT-GTGT------ATCTGATCAGGCCT S_tridecemlineatus300335-SNORD AAAT-T---TTTGAAGGAAATT-CT-GTGT------ATCTGATCAGGCCT O_cuniculus300493-SNORD111 AAAT-T---CTTGAAGAAAATT-CT-GTGT------ATCTGATCAGGCTT E_caballus300252-SNORD111 AAAC-C---TCTTGAAGAAAAT-CT-GTGT------ATCTGATCAGGCCT R_norvegicus300598-SNORD111 TAAT-T---CTTGAGGGAAAGT-GT-GTGT------ATCTCATCAGGCCT D_novemcinctus300570-SNORD111 AAATCT---CTTGAAGACAGTT-CT-GTGT------ATCTGATCAGGCCT M_murinus300459-SNORD111 ATAT-T---CTTGAAGAAAATT-CG-GTGT------ATCTGATC-GGCCT E_europaeus300621-SNORD111 AAATCT---CTTGAAGAAACTT-CT-GTGT------ATCTGATCAGGCCT M_musculus300814-SNORD111 GAAT-T---CATGGAGA---TT-CT-GTGT------ATCTGATCAGGCCT S_araneus300955-SNORD111 GAATCT---CATGAAGAAACTT-CT-GTGT------ATCTGATCAGCCTC O_garnettii300500-SNORD111 AAAT-T---CCTGAAGAAAATT-CT-GTGT------AAAAAAATAATAAT O_garnettii300707-SNORD111 AAAT-T---CTTGAAGAAAATT-CT-GTGT------ATCTGATCGGGCCT M_domestica300136-SNORD111 ATTTCT---TCTGGAGAAAATA-TG-GTGT------AACTGATCAGGCTT O_anatinus302176-SNORD111 ATTTCC---TCTGGAGAAAATC-CT-GTTTTTT---ATCTGATCGGGCCT D_rerio300139-SNORD111 --CTGTT-TGGTGAAGAGAGATTTGTGATA-------TCTGATCTTCATG D_rerio300140-SNORD111 --TTGTT-TAGTGAAGAGAGATTTGTGATA-------TCTGATCTTCATG D_rerio300137-SNORD111 --CTGTT-TGGTGGAGAGATTGTCTTGATA-------TCTGATTTTCATG D_rerio300138-SNORD111 -CTATTT-GACTGGAGACGCATAA-AGACC-------TCTGATCATAATA X_tropicalis300041-SNORD111 ATAAAAT-ATGAAGAGAACAAAAA-ATGCA-------TCTGATCA-GCTG O_latipes300075-SNORD111 TGAATCA-TGA-GCAGAGAATTTT---GAC-------TCTGATCTGAGCT T_rubripes300039-SNORD111 TAAATAA-TAATGAAGAGACCTTTCACAAC-------TCTGATCTCAGCA O_latipes300076-SNORD111 TCAGCAT-CTGTGGGGAGAACTTTTAGACC-------TCTGATCTGCAGA P_pygmaeus300193-SNORD111 TCTTCT----CTAGAGAGAGTTTTTACCTTATGG--ATCTGATCAGGAAA P_pygmaeus300301-SNORD111 TCTTCT----CTAGAGAGAGTTTTTACCTTATGG--ATCTGATCAGGAAA * C_intestinalis300003-SNORD111 TTGT C_intestinalis300004-SNORD111 TTGT C_intestinalis300005-SNORD111 ---- C_savignyi300017-SNORD111 ---- O_latipes300071-SNORD111 ---- S_araneus300095-SNORD111 ---- C_porcellus300870-SNORD111 ---- O_cuniculus300494-SNORD111 ---- M_musculus300813-SNORD111 ---- R_norvegicus300981-SNORD111 ---- S_araneus300956-SNORD111 ---- M_murinus300460-SNORD111 ---- H_sapiens300593-SNORD111 ---- P_troglodytes300691-SNORD111 ---- P_pygmaeus300753-SNORD111 ---- M_mulatta300617-SNORD111 ---- E_europaeus300622-SNORD111 ---- L_africana300463-SNORD111 ---- E_telfairi300808-SNORD111 ---- E_caballus300251-SNORD111 ---- M_domestica300137-SNORD111 ---- O_anatinus302177-SNORD111 ---- O_anatinus302178-SNORD111 ---- E_telfairi300427-SNORD111 ---- H_sapiens300592-SNORD111B ---- P_troglodytes300690-SNORD111 ---- P_pygmaeus300754-SNORD111 ---- C_porcellus300869-SNORD111 ---- M_mulatta300618-SNORD111 ---- E_telfairi300807-SNORD111 ---- L_africana300462-SNORD111 T--- C_familiaris300344-SNORD111 ---- S_tridecemlineatus300335-SNORD ---- O_cuniculus300493-SNORD111 ---- E_caballus300252-SNORD111 ---- R_norvegicus300598-SNORD111 ---- D_novemcinctus300570-SNORD111 ---- M_murinus300459-SNORD111 ---- E_europaeus300621-SNORD111 ---- M_musculus300814-SNORD111 ---- S_araneus300955-SNORD111 ---- O_garnettii300500-SNORD111 T--- O_garnettii300707-SNORD111 ---- M_domestica300136-SNORD111 ---- O_anatinus302176-SNORD111 ---- D_rerio300139-SNORD111 CAC- D_rerio300140-SNORD111 CAC- D_rerio300137-SNORD111 CAT- D_rerio300138-SNORD111 ---- X_tropicalis300041-SNORD111 C--- O_latipes300075-SNORD111 GT-- T_rubripes300039-SNORD111 TC-- O_latipes300076-SNORD111 ---- P_pygmaeus300193-SNORD111 ---- P_pygmaeus300301-SNORD111 ----