snOPY snoRNA Orthological Gene Database

Family: SNORA53

CLUSTAL 2.0.10 multiple sequence alignment C_familiaris300438 TACATGCTTCCTTAGATC--CACCTTTGTGGATGCTAGT-CTTGAACTGA D_rerio300294 CACACGTTC-CTTAGATC--CGCCTCTGGGGA------------GCGTCA D_rerio300295 CACACGTTC-CTTAGATC--CGTCTCTGGGGA------------GCGTCA E_telfairi300566 ------CTTCCTTAGATC--CACCTTTGTGGATGTTAAT-TTTGAACTGA E_telfairi300744 AACATGCTTCCTTAGATC--CACCTTTGTGGATGTTAAT-TTTGAACTGA E_caballus300268 AACATGCTTCCTTAGATC--CACCTTTGTGGGTGTTAGT-CTTGAACTGT E_europaeus300446 AACATGCTGCCTTAGATC--CACCTTTGTGGATGTCAGT-CTTGAACTGA F_catus300227 AACATGCTTCCTTAGATC--CACCTTTGTGGATGCTAAT-CTTGAACTGA G_gallus300026 CACATGCTC-CTTAGATC--CATCTTTGTGAGT---ATC-TTTGTGCTGA H_sapiens300692 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AAT-CTTGAACTGA M_mulatta300626 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AAT-CTTGAACTGA M_murinus300490 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AAC-TT-GAACTGA M_domestica300167 AACATGCTTCCTTAGATC--CACCTTTGTGGATGCCAACTCTTGTTCTGA M_musculus300847 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--GGT-CTTGGACTGA O_anatinus304466 AACATGCTTCCTTAGATC--CACCTTTGTGGTTGCCCAC-CTTGAACTGA O_garnettii300706 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AAT-TTTGAACTGA P_troglodytes300651 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AAT-CTTGAACTGA P_pygmaeus300650 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AAT-CTTGAACTGA R_norvegicus300884 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AAT-CTTGAACTGA S_araneus300159 ----TGTTTGCCTTGCACGTGGGCCTACCTGG-----GT-TTGATTCCTG S_araneus300187 CTTATGCTTCCTTAGATC--CACCTTTGTGGATGTCAAT-CTCAAACTGA S_araneus300447 AACATGCTTCCTTAGATC--CACCTTTGTGGATGTCAAT-CTTGAACTGA S_araneus300593 AACATGCTTCCTTAGATC--CACCTTTGTGGATATCAAT-CTCAAACTGA S_araneus300782 ------------TGGATGGTGGGTTGAATTCTT----GT-TTTGTTTTGA S_araneus300934 AACATACTTTCTTAGATC-TGGTCTTTGTAGGTGAGAAT-CTTGAACCAG S_araneus301014 --AATGCTCCCTTAGATCCTAATTTGTGTTTGT---AAT-CTTGAACTAA S_tridecemlineatus300269 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AGT-CTTGGGCTGA T_nigroviridis300135 CACACGCTC-CTTAGATC--CACCTCTGGAGG------------GCG--- T_nigroviridis300136 CGCACGCTC-CTTAGATC--CACCTCTGGAGG------------GCG--- T_belangeri300294 AACATGCTTCCTTAGATC--CACCTTTGTGGATG--AAT-CTTGAACTGA X_tropicalis300073 AACATGCTCCCTTAGATC--CATCTTTGTGGAAGTCCGC--TTATGCTGA * * C_familiaris300438 GTTCTACTTG-TAAACATTTGGTTTCTTGTAG----TTCCAGTC---AG- D_rerio300294 GTGCTCTTCTTCTGCTGCTCTCTGTGTGAGAG----CATCAGGGTCGACC D_rerio300295 GTGCTCTTCTTCTGCTGCTCTCTGTGTGAGAG----GATCAGGGTCGACC E_telfairi300566 GTTCTACTTG-TAAACTCTGTGTTTCTTGTGG----TTCCAGTC---AAA E_telfairi300744 GTTCTACTTG-TAAACTTTGTGTTTCTTGTAG----TTCCAGTC---AAA E_caballus300268 GTTCTACTTG-TAAACTTCTTGTTTCTTGTAG----TTCCGGTC---AGA E_europaeus300446 GTTCTGCTCG-CAAACTTCCTGTTTCTTGTAG----TTCCAGTC-----A F_catus300227 GTTCTACTTG-TAAACTTTCTGTTTCTTGTAG----TTCCAGTC---AGA G_gallus300026 GTTCTGCTGG-ATAACT-TCAGTTTCTAGCAG----TTCCAGTC---AAA H_sapiens300692 GTTCCACTTG-TAAACTTCTTGTTTCTTGTGG----TTCCAGTAGTCAAA M_mulatta300626 GTTCCACTTG-TAAACTTCTTGTTTCTTGTGG----TTCCAGT---CAAA M_murinus300490 GTTCTGCCCG-TAAACTTCTTGTTTCTTGTAG----TTCCAGT------- M_domestica300167 GTTCTACTTGCTAA--CGTTTGTTTCTTGTAG----TTCCAGTC----AA M_musculus300847 GTTCTACCTG-TAAACTTCTTGTTTCTTGTGG----TTCCAGTC---CAA O_anatinus304466 GTTCCGCCAGTTAAACTCTTTGTTTCTGGTAG----TTCCAGTC----AA O_garnettii300706 GTTCCGCTTG-TAAACTTCTTGTTTCTTGTAG----TTCCAGT------- P_troglodytes300651 GTTCCACTTG-TAAACTTCTTGTTTCTTGTGG----TTCCAGT---CAAA P_pygmaeus300650 GTTCCACTTG-TAAACTTCTTGTTTCTTGTGG----TTCCAGT---CAAA R_norvegicus300884 GTTCTACCTG-TAAACTTCTTGTTTCTTGTAG----TTCCAGTC---CAG S_araneus300159 GCATCACATA-TGGTCC-ATCGAGCCTGCCAGGAGTTATCCATG---AGC S_araneus300187 GTTCTACTGG-TAAACT-TTGGTTTCCTATAG----TTCCCGTG---AAA S_araneus300447 GTTCTACTCG-TAAACT-TTGGTTTCTTGTAG----TTCCAGTG---AAA S_araneus300593 GTTTTACGGG-TAAACT-TTGGTTTCCTGTAG----TTCCAGTG---AAA S_araneus300782 ATAGGAGGAA-AAGCTG-TTTTTGTGTTTCTC--CTTATAC-TA---TGC S_araneus300934 ATTCTATGTG-TAAATT-TTCATTTCTTCTTG----TTTCAGTG---AAA S_araneus301014 ATTCTACTCA-TAAATT-TTAATTTCTTGCAG----TTCTAGTA---AAA S_tridecemlineatus300269 GTTCTACTTG-TAAACTTTCTTGTTCCTGTAG---TTTCCAGTC----AA T_nigroviridis300135 --------------CTGTTCTCCG-------------AGCAGAGCT---- T_nigroviridis300136 --------------CTGTTCTCCG-------------AGCAGAGCT---- T_belangeri300294 GTTCTACTTG-TAAAC--CTTGTTTCTTGTAG----TTCCAGTC----AA X_tropicalis300073 GTCCTGCTAACTGCTCATTTTGGGCTTTAGAAG---TTCCAGCT----AA C_familiaris300438 GAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T D_rerio300294 GCAGCTCCCGCCAGCTTTACTG-CTGTACCGTCA-GAGGCGCT------T D_rerio300295 GCAGCTCCCGCCAGCTTTACTG-CTGTACCGTCA-GAGGCGCT------T E_telfairi300566 GAAGCATCCGGCAACTTTT-TGGATGTACAGCCA-AAGGTGCT------T E_telfairi300744 GAAACATCCGGCACCTTTTGTGGTTGTACCCTCTTAAGGTGCT------T E_caballus300268 GAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T E_europaeus300446 GAGACATCCGGCAACTTTTTTGGTTGTACAGTCA-AAGGTGCT------T F_catus300227 GAAACATCCAGCAACTTCTTCGGTTGTATAGTCA-AAGGTGCT------T G_gallus300026 GTTGC--TCGGCAACTTTTTTGGTTGTACGGTCA-AAGATGCT------T H_sapiens300692 GAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T M_mulatta300626 GAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T M_murinus300490 CAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T M_domestica300167 GAGGCATCCAGCAACTTTACCGGTTGTACTGTCA-AAGGTGCT------T M_musculus300847 GAAACGTCCAGCAACTTTGTTGGTTGTATAGTCG-AAGGTGCT------T O_anatinus304466 GAGGCATCCGGCAACTTCTTTGGTTGTACAGTCA-AAGGTGCT------T O_garnettii300706 CAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T P_troglodytes300651 GAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T P_pygmaeus300650 GAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCA------T R_norvegicus300884 GAAACATCCAGCAACTTTGTTGGTTGTACAGTCA-AAGGTGCT------T S_araneus300159 AAAGAAAGAAAGGAAGGAAAAGGTTATATAGTCA-AAGGTGCC------T S_araneus300187 GAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T S_araneus300447 GAAACATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T S_araneus300593 GAAATATCCAGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------T S_araneus300782 TCAATCAGCTAGTCATTCCATGGCTTTAAGATTACAATGTACT------T S_araneus300934 GAAACATCCAGCCCCCTTTTGGGTTGTATAGTCA-AAGGTGCTAGCACAT S_araneus301014 GAAACATCCAGCACCTCTCTTGTTTGTACCGTCA-AAGGTTCT------T S_tridecemlineatus300269 AGAACATCCGGCAACTTTTTTGGTTGTATAGTCA-AAGGTGCT------- T_nigroviridis300135 -----CCTCAGCAGCTTC-CTG-CTGTACTGTCG-GAGGTGCT------T T_nigroviridis300136 -----CCTCAGCAGCTTC-CTG-CTGTACTGTCG-GAGGTGCT------T T_belangeri300294 AAAACATCCAGCAACTTTTTTGGTTGTACAGTCA-AAGGTGCT------T X_tropicalis300073 GAGACAACCAGCAACTTTTTTGGTTGTACAGTCA-AAGGTGCT------T * * ** * * C_familiaris300438 GAGTCATTGGCATGTGAGATAAATATACCTGCATGTTAGTCTT-AGGTTC D_rerio300294 GAGTCATTGGCGTGTGAGATCAGTCCATCTG--------CTTACCCAGAA D_rerio300295 GAGTCATTGGCGTGTGAGATCAGTCCACCTG--------CTTACCCAGAA E_telfairi300566 GAGTCATTAA-AGAAAAGAACAAAATGAAAGGATGGTAACATCAAAGGTA E_telfairi300744 GAGTCATTGGCATGTGAGAGAACTATACCTTC-TACTGTTCTT-TGGTTC E_caballus300268 GAGTCATTGGCATGTGAGATAAATATACCTGCATGTTAGTCTT-ATGTTC E_europaeus300446 GAGTCATTGGCATGTGAGAGAAATACACCTGCATGTTAGTCTC-CAGTTC F_catus300227 GAGTCATTGGCATGTGAGATAAATATACCTGCATGTTAGTCCT-AGGTTC G_gallus300026 GAGTCATTGGCATGTGAGAGTAATATAACTGCATGTTAGCTTT-CTGTTC H_sapiens300692 GAGTCATTGGCATGTAAGAGAAATATACCTGCATGTTAGTCTA-ACGTTC M_mulatta300626 GAGTCATTGGCATGTAAGAGAAATATACCTGCATGTTAGTCTA-ACGTTC M_murinus300490 GAGTCATTGGCATGTGAGATAAATACACCTGCATGTTAGTCTA-AAGTTC M_domestica300167 GAGTCATTGGCATGTGAGATGAATATACCTGCATATTAGTCAT-GCGTTC M_musculus300847 GAGTCATTGGCATGTGAGACTAATATACCTGCATGCTAGTCTTCAGGTTC O_anatinus304466 GAGTCATTGGCATGTAAGAGAAATATACCTGCATGTTAGTCAT-ACGTTC O_garnettii300706 GAGTCATTGGCATGTGAGATAAACATACCTGCATGTTAGTCTA-GGGTTC P_troglodytes300651 GAGTCATTGGCATGTAAGAGAAATATACCTGCATGTTAGTCTA-ACGTTC P_pygmaeus300650 GAGTCATTGGCATGTAAGAGAAATATACCTGCATGTTAGTCTA-ACGTTC R_norvegicus300884 GAGTCATTGGCATGTGAGACTAATACACCTGCATGTTAGTCCTCAGGTTC S_araneus300159 GAGTCATTGGCATGTGAGATCAATATACCTGCATGTTAGTCTT-AAATCC S_araneus300187 AAGTCATTGGCATGTGAGATCAATATATCTGCAAGTTAGTCTT-AGGTTC S_araneus300447 GAGTCATTGGCATGTGAGATCAATATACCTGCATGTTAGTCTT-AAGTTC S_araneus300593 GAGTCATTGGCATGTGAGGTCAATGTATCTGCAAGTTAGTCTT-AGGTTC S_araneus300782 GAGTCATTGACATGTGAGATCAATATACCTGCATGTTAGTCTT-AAGTTC S_araneus300934 GTGTCACTAGTACGTGAGATGAA-GCAGCTGCATGCTGGCCCT-GGGCCC S_araneus301014 GAGTCATGGGCATGTGAGATCAACATACACGCATGTTCGATCT-ATGTCC S_tridecemlineatus300269 GAGTCAT-GGCATGTGAGATCA-TATACCTGCATGCTAGTCTC-AGGTTC T_nigroviridis300135 GAGTCATTGGCGTGTTAGATCAGTCCACCTGTCCTCCAGCCCACCTGCAG T_nigroviridis300136 GAGTCATTGGCGTGTGAGAACAGTCCACCTGCCCTCCAGCCCTCATGCAG T_belangeri300294 GAGTCATTGGCATGTGAGATAAATATACCTGCACATTAGTCTA-AGGTTC X_tropicalis300073 GAGTCATTGGCATGTGAGACTAATATACCTGCACGTTTGTCTTGGCATTT **** ** * C_familiaris300438 TGATAG-AAATGACACGCAATTGTGCTGCCATTTTTT---GCTGTCAGGA D_rerio300294 TTCTCT---CTGCCCTGAACCTT---CACAGGAGTCCA---CCAGGGCAG D_rerio300295 TTCTCT---CTGCCCTGAACCTT---CACAGGACTACA---GCAGGGCAG E_telfairi300566 T--TGAGAACTGGTATAAAATGAGAGAAAAAATGCA----ATTATCACAA E_telfairi300744 TGATGG-AAATNNNNNNN-------------------------------- E_caballus300268 TGATAG-AAATGACATGCAGTTGTGCTGTCATTTTTTTT-ACTATCAGGA E_europaeus300446 TGGTGG--GATGGCA-GCAGCCG-GCTGCC-ATTCGCT---CCGCCAGGA F_catus300227 TGATAG-AAATGACATGCAATTGTGCTGCCATTTTTTTTTGCTATCAGGA G_gallus300026 TGATAA-AAGTGACTGTAAATATGAGAGTC-ATTTACC--GCTATCAGGA H_sapiens300692 TGATAG-AAATGACATGCATTTATGCTGCC-ATTTGTT--ACTATCAGGA M_mulatta300626 TGATAG-AAATGACATGCATTTTTGCTGCC-ATTTGTT--ACTATCAGGA M_murinus300490 TGATAG-AAATGACATGCAGTTATGCTGCC-ATTTTAT--ACTATCAGGA M_domestica300167 TGATAG-AAATGGCAGT--------GTGTCGTTTCTT---ACTATCAGGA M_musculus300847 TGATGG-AAGTGACATGCG-TGATGCTGTCATGTGTT---ACTGTCAGGA O_anatinus304466 TGATTGCAAGTGACAGCAGCATTGCGTGTCATTTCTC---ACGATCAGAG O_garnettii300706 TGATAG-AAATGGCATGCAGTTATGCTGCC-ATTTTTT--ACTATCAGGA P_troglodytes300651 TGATAG-AAATGACATGCATTTATGCTGCC-ATTTGTT--ACTATCAGGA P_pygmaeus300650 TGATAG-AAATGACATGCATTTATGCTGCCCATTTGTT--ACTATCAGGA R_norvegicus300884 TGACGG-CAGTGACACGCG-TTATGCTGTCATGTGTT---ACTGTCAGGA S_araneus300159 TGATAG-AAATGACATGCAATTATGCTGCC-ATTCTTG--ACTATCAGGA S_araneus300187 TGATAG-AAATGACATGCAATTATGCTGCC-GTTCTTG--ACTATGAGGA S_araneus300447 TGATAG-AAATGACATGCAATTATGCTGCC-ATACTTG--ACTATCAGGA S_araneus300593 TGATAG-AAATGACATGCAATTATGCTGCC-ATTCTTG--ACTATCAGGA S_araneus300782 TGATAG-AAATGACATGCAATTATGCTGCC-AAACTTG--ACTATCAGGA S_araneus300934 GAGAAG-A-ATGACCTGCAATTATGCTGCA-ATTCTTT--AGCACAAAGT S_araneus301014 TAACTG-AGATGACATAAAATCATGTGTTC-ATTCCTG--A-TGAACCGG S_tridecemlineatus300269 TGATGGGAATTGGCATGCNNNNNNN------------------------- T_nigroviridis300135 CACTGA---CCAGCCTGCGTTCTAAACACAGGAAGCTC---TCACTGTTG T_nigroviridis300136 CACTGA---CAACCCTGGGTTCTGAACACGGGGGTGCA---CCAGTGCTG T_belangeri300294 TGATAG-AAATGACATGCAGTTATGCTGCC-ATTTTCC--ACTGTCAGGA X_tropicalis300073 TGATGG-CCGTGGTTTCCTAACCACATGCC----------ACCATCAGAA C_familiaris300438 CTCGACTGGTGTGCGG-ACACT- D_rerio300294 AGCTGCTGGGTAGCGG-ACACA- D_rerio300295 AGCTGCTGGGGAGCGG-ACACA- E_telfairi300566 T---------------------- E_telfairi300744 ----------------------- E_caballus300268 CTCGACTGGTGTGCGG-ACACT- E_europaeus300446 CTCGACTGGTGTGCGG-ACACG- F_catus300227 CTTGACTGGTGTGCGG-ACACT- G_gallus300026 CATGGCTGGTATGCAG-ACATT- H_sapiens300692 CTCGACTCGTGTGCGG-ACATTT M_mulatta300626 CTCGACTCGTGTGCGG-ACACT- M_murinus300490 CTCGACTGGTGTGCGG-ACACT- M_domestica300167 CTTGATTGGTATGCGG-ACAGA- M_musculus300847 CTCGACTGGTGTGCGG-ACACG- O_anatinus304466 CCTGACTGGTGTGCGG-ACACT- O_garnettii300706 CTTGACTGGTGTGCGG-ACACT- P_troglodytes300651 CTCGACTCGTGTGCGG-ACATT- P_pygmaeus300650 CTCGACTCGTGTGCGGGACAT-- R_norvegicus300884 CTCGACTGGTGTGCGG-ACACT- S_araneus300159 CCTGACTGTTGTGTGG-ACACT- S_araneus300187 CGTGACTGGTGTGCAG-ACACT- S_araneus300447 CGTGACTGGTGTGCGG-ACACT- S_araneus300593 CATGACTGGTGTGCAG-ACACT- S_araneus300782 CGTGACTGGTGTGCAG-ACACT- S_araneus300934 TTTGACTGGTGTGCAG-ACATT- S_araneus301014 ACTGTCCAGGGTGCAG-ACTTT- S_tridecemlineatus300269 ----------------------- T_nigroviridis300135 TCACGCTGGGGGACGG-ACACG- T_nigroviridis300136 CCAGTCTGGGGGGTGG-ACATT- T_belangeri300294 CTTGACTGGTGTGCGG-ACACT- X_tropicalis300073 TTTAGCAAATGTGCGG-ACATA-

Copyright © 2008 RI Laboratory, Frontier Science Research Center, University of Miyazaki, All rights reserved