CLUSTAL 2.0.10 multiple sequence alignment C_porcellus300040-SNORA31 -CTGCATCCACT-GACAGACC-TTGAAAAAT---TTGTTGTTCTTTT--- C_porcellus300513-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAAT---TTGTTGTTCTTAT--- S_araneus300796-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAAGTTGCTGTTGTTCATTT--- S_araneus301076-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTTGCTGTT---TGTTT--- C_familiaris300367-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTGGCTGTTGTTCTTTT--- S_tridecemlineatus300068-SNORA -CAGCATCCACT-GATAGACC-TTGAACAATTTGCTGTG-TTCTTTT--- E_telfairi300088-SNORA31 -GAGCATCCTCT-GATAGACC-TGGGACAATTGACCGTTATTCTGCT--- E_telfairi300459-SNORA31 -GAGCATCCTCT-GATAGACC-TGGGACAATTGACCATTGTTCTTCT--- E_telfairi300601-SNORA31 -GAGCATCCTCT-GATAGACC-TGAGACAATTGACCATTGTTCT------ E_telfairi300847-SNORA31 -GAGCATCCTAT-GATAGACC-CGAGACAATTGACCATTGTTCTTCT--- E_telfairi300523-SNORA31 -NNNNNNNNTCT-GATAGACC-TGGGACAATCGACCGTTGTTGTTCT--- E_telfairi300860-SNORA31 -GAGCATCCTCT-GATAGACC-TGGGACAATCGACCGTTGTTGTTCT--- E_telfairi300309-SNORA31 -CAGCATCCTCT-GATAGACG-TGGGACAATTGACCGTTGT---TCT--- E_telfairi300730-SNORA31 -GAGCATCCTCT-GATAGACC-TGGGACAATTGAC--TCGCTGTTCT--- E_telfairi300602-SNORA31 -GAGCATCCTCT-GATAGACC-TGGGACAATTGACTGTTGTT-TTCT--- E_telfairi300070-SNORA31 ---ACATCCTCT-GATAGACC-TGGGACAATTGACCATTGTTCTTCT--- E_telfairi300756-SNORA31 -CAGCATCTACT-GATAGACC-TGGGACAATTGACTGTTGTTCCTTT--- O_cuniculus300127-SNORA31 -TTGTATCCACT-GATAGACC-TGGAACAATTAAC---TGTTCTTTT--- E_europaeus300426-SNORA31 -CTGAATCCACT-GATAGACCATCGAACAGTTTACTGTTGTTCTTT---- M_murinus300111-SNORA31 -CTGTATCTACA-GATAGATGGT-GAACAGTTTGCTGTTGTGCTTTT--- L_africana300375-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTTGCTGTTGTTCTTTT--- M_lucifugus300142-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAAC---CTGTTGTTCTTTT--- E_caballus300352-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTTGCTGTTGTTCCTTT--- D_novemcinctus300123-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAAA---TTGTTGTTCTTTT--- H_sapiens300600-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTTACTGTTGTTCTTTT--- P_troglodytes300539-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTTACTGTTGTTCTTTT--- P_pygmaeus300715-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTTACTGTTGTTCTTTT--- M_mulatta300739-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTTACTGTTGTTCTTTT--- O_cuniculus300146-SNORA31 -CTGCATCCACT-GATAGACC-TTGAATAATCTGCTGTTGTTCTTTT--- O_cuniculus300382-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATCTGCTGTTGTTCTTTT--- O_cuniculus300269-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATCTGCTGTTGTTCTTTT--- M_murinus300098-SNORA31 -CTGCATCCACT-GATAGACC-TTGAACAATTTGCTGTTGTTCTTTT--- M_mulatta300140-SNORA31 -GTCCATTTAC--ATTTACCT-TTAAGGTTAATATTGTTATGTGTTTT-- O_cuniculus300139-SNORA31 GGCCCTTCTGT--ATTACACC-TTGAACAGTTTGTTGTTGT-TATTTT-- D_novemcinctus300463-SNORA31 -CTGCATCTACT-GATAGACC-TTGAACAAATTGTTGTTCT----TTT-- M_lucifugus300033-SNORA31 -CCACATCCACT-GACAGGCC-TTGAACTATCTGATGTTGTTCTTTT--- P_pygmaeus300329-SNORA31 -CTACATCCACT-GACAGACC-TTGGACAGTTTGCTGTTGTTTTTTTTTT E_europaeus300512-SNORA31 -CTGCATCCACT-GATAGACCTTTGAACAGTTTCCTGTT----CTTT--- M_musculus300391-SNORA31 -TTGCATGCATT-GACAGCCC-TTGACCAGTTTGTGGTTGTTCTTCT--- R_norvegicus300844-SNORA31 -GTGCATACACT-GATAGACC-TTGAACAGTTTGTGGTTGTTCTTCT--- M_musculus300825-SNORA31 -CTGCATCCACT-GATAGACC-TCGAACAGTTTGTGGTTGTTCTTCT--- R_norvegicus300130-SNORA31 -CTGCATCCACT-GATAGACC-TCGAACAGTTTATGGTTGTTCTTCT--- R_norvegicus300298-SNORA31 -CTACATCCACT-GATAGACC-TAGAATGGTTTGTGGCTGTTCTTGT--- O_anatinus301161-SNORA31 -CCGCATCTACT-GATAGACC-TTGAACAGTCCTCCGTTGTTCTTCC--- O_anatinus302165-SNORA31 -CCGCATCTACT-GATAGACC-GTGAACAGTTCTCCGTTGTTCTTCT--- M_domestica300023-SNORA31 -ATGCATCCACT-GATAGACC-TTGAACAAGTTACTGTTGTTCACT---- E_caballus300062-SNORA31 -ACGCATCTATTTGACAGACC-TGGAGCAGTTACTGTCTGCTGCTAA--- C_porcellus300040-SNORA31 -GGTTTGCACTAGG-----ATGCTAAAGGA---AAAATCCCTGTGCTTTC C_porcellus300513-SNORA31 -GGTTTGCACTAGG-----ATGCTAAAGGA---AAAATCCCTGCACTTTC S_araneus300796-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGAA--AATAATCCCAGCGCTTTC S_araneus301076-SNORA31 -GATTTGCACTATG-----ATGCAAAGCAA--AATCATCCCAGTGCTTTC C_familiaris300367-SNORA31 -GGTTTGCACTAGG-----ATGCAAGAGAA--AAAAATCCCTGCGCTTTC S_tridecemlineatus300068-SNORA -GGTTTGCACTAGG-----ATGCAAAAGAA--AATAATCCCTGTGCTTTC E_telfairi300088-SNORA31 -GGTTTTCACTAGG-----AAGCGAGAGAATACAAA-TCCCTGCGTTTTC E_telfairi300459-SNORA31 -GGTTTGCACCAGG-----ATGCGAGAGAATACAAA-TCCCTGCGCTTTC E_telfairi300601-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGAACAAAAAGTCCCCGTGCTTTC E_telfairi300847-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGATTAAAAAGTCCCTGTGCTTTC E_telfairi300523-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGAATAAAAAGTCCCTGCGCTTTC E_telfairi300860-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGAATAAAAAGTCCCTGCGCTTTC E_telfairi300309-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGAATAAAAAGTCCCTGCGCCTTC E_telfairi300730-SNORA31 -GGTTTGCACTAGG-----ATGTGAAAATATAAAAGGTCCCTGCGCTTTC E_telfairi300602-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGAATACAAAATCCCTGCGCTTTC E_telfairi300070-SNORA31 -GGTTTGCACTAGG-----ATGAGAAAGAATACAAAATCCCTGTGCTTTC E_telfairi300756-SNORA31 -GGTTTGCACTAGG-----ATGCTAAAGAATAAAAAATCCCCGCACTTTC O_cuniculus300127-SNORA31 -GGTTTGCACTAGG-----ATGCCAAAGAA---AAAATCCCTGTA----C E_europaeus300426-SNORA31 -GGTTTGCACTAGG-----ATGCAAGAAGA--AAAAA-------AATCCC M_murinus300111-SNORA31 -GGTTTGCACTAGG-----AGGCAAAAGAA--AAAAATCCCTGTGCTTTC L_africana300375-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGAA--AAA-ATCCCTGCGCTTTC M_lucifugus300142-SNORA31 -GGTTTGCACTGGG-----ATGCGAAAGAA--AAATATCCCTGCGCTTTC E_caballus300352-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGAA--AGAAATCCCTGCGCTTTC D_novemcinctus300123-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGAA--AAGACTCCCTGCGCTTTC H_sapiens300600-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGAA--AGAAATCCCTGCGCTTTC P_troglodytes300539-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGAA--AGAAATCCCTGCGCTTTC P_pygmaeus300715-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGAA--AGAAATCCCTGCGCTTTC M_mulatta300739-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGAA--A--AATCCCTGCGCTTTC O_cuniculus300146-SNORA31 -GGTTTGCACTAGG-----ATGCCAAAGAA--A--AATCCCTGCGCTTTC O_cuniculus300382-SNORA31 -GGTTTGCACTAGG-----ATGCCAAAGAA--A--AATCCCTGCGCTTTC O_cuniculus300269-SNORA31 -GGTTTGCACTAGG-----ATGCCAAAGAA--A--AATCCCTGCACTTTC M_murinus300098-SNORA31 -GGTTTGCACTAGG-----ATGCGAAAGAA--A--AATCCCTGCGCTTTC M_mulatta300140-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGAA--AAA--TCCCTGCACTTTC O_cuniculus300139-SNORA31 -GGTTTGCACCAGG-----ATGCTAAAGAA--AAA--TCCCTGTACTTTC D_novemcinctus300463-SNORA31 -GGTTTGCACTAGG-----ATGCAGAAGAA--AAAACTCCCTGCACTTTC M_lucifugus300033-SNORA31 -GGTTTGCACTAGGATGTGGGGGGGGGGGG--GGGAATCCCTGTACTTTC P_pygmaeus300329-SNORA31 TGGTTTGCTCTGGG----GATGCAAAAGAG--GGAAATCCCGGCACTTCC E_europaeus300512-SNORA31 -GGTTTGCACTAGG-----ATGCAAGAGGA--AAAAATCCTTGCGCTTTC M_musculus300391-SNORA31 -GGTCTGTACTAGG-----ATGCAAAAGAA--AAG-CTCCCTGAGTGTTC R_norvegicus300844-SNORA31 -GGTTTGCATTAGG-----ATGCAAAAGGA--AACTCTTCCTGAGCTTCC M_musculus300825-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGGA--AACTCTCCCTGCGCTTCC R_norvegicus300130-SNORA31 -GGTTTGCACTAGG-----ATGCAAAAGGA--AACTCTCCCTTCGCTTCC R_norvegicus300298-SNORA31 -TGTCTGCACTAGG-----ATGCAGAGGAA--ACCACTCCTGGCGCTTCC O_anatinus301161-SNORA31 -GGTTTGCACGAAG-----ATGCGAAAGAA---AGTCTCCTCCCGTTTCC O_anatinus302165-SNORA31 -GGTTTGCACAATG-----ATGCGAAAGAA---CACTTCCTCGCACTTTC M_domestica300023-SNORA31 -GGTTTGCACTAGG-----GTGCCAAAGAG----AAGTCCTCCAGCTTTC E_caballus300062-SNORA31 -GGTTTCCACTACA----GATGCAAGAAAA--AGGTGTCCTCGCGCTTTC * * * * C_porcellus300040-SNORA31 TGTCTGTCTT--TATGGCAT-CCCAGATTGAACTGGGGAGTACACCT C_porcellus300513-SNORA31 TGTCTGTCTT--TATGGCAG-CCCAGATTGAATTGGGGAGTACACCT S_araneus300796-SNORA31 TGTCTGCCTC--TGTGGCAG-CC-AGATTGAATAGGGGAGAACATTG S_araneus301076-SNORA31 TGTCT----C--TGTGGCTG-CC-AGATTGAATAAGGGAGAACATAT C_familiaris300367-SNORA31 TGTCTGTCCC--TGTGGCAG-CCCAGATTGAATAGGGGAGTACATCG S_tridecemlineatus300068-SNORA TGTCT----T--TGTAACAG-TCCAGATTGAATTGGGGAACACATCT E_telfairi300088-SNORA31 TGTCTGTCTT--TGTGGCGGGTCCAGATTGAATGAGGGATTACATAG E_telfairi300459-SNORA31 TGTCTGTCTT--TGTGGCGGGTCCAGATTGAATGAGGGATTACATAG E_telfairi300601-SNORA31 TGTCTGTCTT--TGTGGCGGGTCCAGATTGAATGAGGGATTACACAG E_telfairi300847-SNORA31 TGTCTGCCTT--TGTGGCGGGTCCAGATTGAATGAGGGATTACATAG E_telfairi300523-SNORA31 TGTCTGTCTT--TGTGGCGGGTCCAGATTGAATGAGGGATTACATAG E_telfairi300860-SNORA31 TGTCTGTCTT--TGTGGCGGGTCCAGATTGAATGAGGGATTACATAG E_telfairi300309-SNORA31 TGTCTGTCTT--TGTGGTGGATCCAGATTGAATGAGCGATTACATAG E_telfairi300730-SNORA31 TGTCTGTCTT--TGTGGCAGGTCCAGATGGAATGAGGGATTACACAG E_telfairi300602-SNORA31 TGCCTGCCTC--TGTGGCGGGTCCAGTTTGAATGAGGGATTACACAG E_telfairi300070-SNORA31 TGCCTGTCTT--TGTGGAGGCTTCAAATTGAATGAGGGATTACATAG E_telfairi300756-SNORA31 TGTCTGTCTT--TGTGGCTGGTCCAGATTGAATGGGGGATTACATAC O_cuniculus300127-SNORA31 TGTCTGTCTT--TGTGGCAG-CCCAGATTGAATTGGGGAATACATTT E_europaeus300426-SNORA31 TGTCTGTCTT--TGTGGTGG-CCCAGATTGAATAAGAGATTACATCT M_murinus300111-SNORA31 TGTCTGTCTT--TGTGGTGG-CACAGATTGAATTGGTGAATACATCT L_africana300375-SNORA31 TGCCTGTCTT--TGTGGCGG-CCCAGATTGAATGAGGGAATACATCT M_lucifugus300142-SNORA31 TGTCTGTCTT--TGTGGCGG-CCCAGATTGAATAAGGGACTACATCT E_caballus300352-SNORA31 TGCCTGTCTC--TGTGGCGG-CTCAGATTGAATAGGGGAATACATCT D_novemcinctus300123-SNORA31 TGTCTGTCTT--TGTGGCGG-CCCAGATTGAATAGGGGAATACATAT H_sapiens300600-SNORA31 TGTCTGTCTT--TGTGGCGG-CCCAGATTGAATTGGGGAATACATCT P_troglodytes300539-SNORA31 TGTCTGTCTT--TGTGGCGG-CCCAGATTGAATTGGGGAATACATCT P_pygmaeus300715-SNORA31 TGTCTGTCTT--TGTGGCGG-CCCAGATTGAATTGGGGAATACATCT M_mulatta300739-SNORA31 TGTCTGTCTT--TGTGGCGG-CCCAGATTGAATTGGGGAATACATCT O_cuniculus300146-SNORA31 TGTCTGTCTT--TGTGGCAG-CCCAGATTGAATTGGGGAATACATTT O_cuniculus300382-SNORA31 TGTCTGTCTT--TGTGGCAG-CCCAGATTGAATTGGGGAATACATTT O_cuniculus300269-SNORA31 TGTCTACCTT--TGTGGCTG-TCCAGATTGAATTGGGGAATACATTT M_murinus300098-SNORA31 TGTCTGTCTT--TGTGGCAG-CCCAGATTGAATTGTGGAATACATCT M_mulatta300140-SNORA31 TGTCTGTCTT--TGTGGCAG-CCCAGATTGAATTGGGGAATACATCT O_cuniculus300139-SNORA31 --TCTGTCTT--TGTGGCAA-CCCAGACTGAATTGCGGAATACATTT D_novemcinctus300463-SNORA31 ----TGCCTT--TGTGGCAG-CCCAGATTGAATAGGGGAATATATAT M_lucifugus300033-SNORA31 TATCTATCTG--TGTAGTAG-CCCA-ATTGAATAAGGGATTATATCT P_pygmaeus300329-SNORA31 TGTCTGTCTT--TGTGGCAG-CCTGGATTGAATAGGGGAATGCATCT E_europaeus300512-SNORA31 TGTCTGTCTT--TGTGGCAG-CCCAGATTGAATAAGGGATTACATCT M_musculus300391-SNORA31 TGCCTGCCTC--TGTGGC-G-TTTAGATTGAATTGGGATATACATCT R_norvegicus300844-SNORA31 TGATTGCCTT--TGTGGCAG-TTCAGATTGAATTGTGGTGTACATCT M_musculus300825-SNORA31 TGCCTGCCTT--TGTGGCAG-TTCAGATTGAATTAGGGAGTACATCT R_norvegicus300130-SNORA31 TGCCTGCCTT--TGTGGCAG-TCCAGATTGAATTGGGGAGTACATCT R_norvegicus300298-SNORA31 TTTCTGTCTT--TGTGG----TCCAGATTGATGTATAGAGTTAAACT O_anatinus301161-SNORA31 TGCCTGCCTCG-CGTGGCAG-CCCAGATTGAATGGGGGAGTACACGT O_anatinus302165-SNORA31 TGCCTGCCTTG-CGTGGCCG-CCCAGATTGAATCGGGGAGTACAGCT M_domestica300023-SNORA31 TGTCTGTCTC--TGTGGCAG-CCCAGATTGAATAGAGGAATACATTT E_caballus300062-SNORA31 TTTCTGTCTCATTGTGGCAG-CCAAGATTGAATGGGGGAATACAGGG * * ** *