Cavia_porcellus AARSD1 | ||
organism | Cavia_porcellus | |
locus name | AARSD1 | |
chromosome ⁄ contig | GeneScaffold_1790 | |
snoRNA list | SNORA2 | |
snoRNA position | 9688..9825 | |
length | 14270 | |
sequence |
tgcctagattctaggaaaccaagggaattaacctaagtttccatggatggattccaact
cacttttcacttgcccatttttcctatcagcaaaagtgcagggtgcgcgtggagagctgc gtgctcagggtcagggtgtggacttagcctgtgccaggccgattccaccagaagtgctaa agacttagtacttgatgcggcgcaggtcaaggaagccagagctgggaggtctctggtgcc ttctccacgctctgcagactccctgagcctcacgttctcacggatgtgcacgccttccca cgcctcaggtcacgcatcctgcacgccagttcccaggcctctctgtccacctacacctgg acacatgtcgcctgtctcgggtacacccgacgccatccagccagtggcttcagccacctg catctccgtcaccaccccccactgctcacctggctctccaaccgcacccgcggccgctgc ccgggcggcttgtcgccctcatcgtcgtcctcgtcgtggacagcgtccctgggcccctcg tcccccagcacatgcgggcagccgcggaaggcgaagtcctcgagctcgcgcaggaggcgc tgctgctcggccggcgccccgcgcaccacctggcgcaggcggaactgcacctgcgcgaag tgcgaggaaagcgcaagcagcgccgagtccagccgccgccgctcagcccgcagccgccgc agcgcccggcccggcgagtccgggggagacccggaggccgcaccgggctcctccgccgcc tcagagaacgccaccacccccggcccggcctcggccactgcccccaccggggcccagcgc accgcctcgcacggcggcggtgactcttcttcttcctcttctgcgtccttcgccttggac acagcgatcgccgccgccgctgtcactggctccgcggcagcttgcacggccgccatcttc ccggaagcgcagccacacagccgccccactgcctcgctgccatggtaacagcgggcgggt cggaagcctggggcgggacttccgggaggacgtcctgaggagggcggctccgtggcgccg gcgtcctggccagtcctgtgtggttgagcggctattgtgaattgggctccggaggccggg gacgggtcgttccctcgcgcctggaatctggaggccccgagagtgcatttgctgggccga gctcctccagtcccctcccgtgcagatcccgggcagcccagcctcgtcccttcctcgctc cccttgtctcagccatataaggagcagcagctgccggggcggtcggaggatctaaagata gcggccaggcctgcggctccagacaccaccgggcagcaggatcctcatggcacggtgaga ggttcaggggacctacttggcttccccccacggtccctgtcccaggtcttctgcgagctg caggcgccgttgggagccctgggctctgtgaccgggccgagggcggcgagacccgaatgc tccccctatgctgcctcctgcccccgattctccccgggttcacccttcacgccgcgcatc cacatccacgctcccggcgccccctgcccgccctgccaacgtccccacgcggacccctct gcaggcagcatgcccggaccttgtggtacgacaggcccaagtacgtgttcatggagttct gcgtggaggacagcacggacgtgcgcgtgctcctggaggaccaccgcgtggtgttcaggt agcgtttgccctcggggctggctccccggacgccccttcccggcgcccgctgcagccttc acctcgcctgggcctcgttgcctctgcagctgcaggaacggcgacggagtggagctgtac aacgaaatcgagttctacgccaaggtgaactccaaggtgagggctgccgcgcaggctccc cgggctctggagggcgcccgaaaagccaggcactgagcgaggccctgtcggcaggactcc caggataagcgctccggccgctccgtgacgtgctttgtgaggaagtggaaggagaaggtg gcctggccgcggctcaccaaggaggacatcaaggtgagaggggcgggcctggccttccgc atggctcgctgcccgcaggtgcagctccccaagtgagcggggcagaccggctccttcccg cccagtgtcggtaactcaccactcctgcctagttacacttcttgatattattttctggta cgggggattgacggggcggcatgccatcccttactttttgagacagggtctcccagagtt actaagctgccaggctggaatttaggatcttctttctgcctcagccttccggaattggca cccaccggcctatgtactcctaaatattttttaatccatttcttcctggctcaaacctca cccgtctgggtttgtggggaggcttgttgcatattctggaccccatactccagtcctctt ctgcgttgcctttcacgatcactctcccaccggagacgcgctggtggccacttctcccct gctgtggaaagtgcgccacctgctggccgaacctggcttttgcgtccctttgagcaggcg gcacagtgtgaaaactgttatgattggttactgagattgacagtctttgattcacgcagg cgtttaaaaatgtggatatttgggtcccgggattttagctcagtggcgagttcgatcctc ggtaccaaaaaaaaaaaaaaaaaaaaaaaaaagtggatatttgcctataacctcaactgc tcaggagaccgaggcagaagaatcacaaattcctcctgggcaacttagtgagacccttgg accctgtctcaaaagataaaaaggcctgggaagtgtagtttagtttagtatcgtgtttcc tggcatgcttgaggccatgggtcagtcctcagtgctgcctgcccctccaaaagtggattt ttacttgcaaacccagattattagcgtctttgaaaaacaaggaggatctggggctgggga tttagctcagtggcataagcgcctgccttgcaagtgtgtagacgtgagtttgatccctgg tactgataaaaaagagaaagacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaa gaaagaaaaacaaggaggatctggccatcctagtataaatccccagccctgagtagaggc catgccttcagcctctgtcctctttattccccacttggcttctttttcaaccctgaggcc tccaaccttccagggcagtatgcccgcctcatctgacccatttggtacggctggccatgc tgaggatggagatggctgagactcctccactgccgtcttcttccctttcctgctcgattc agcctcctgaacctccctgccagtaactctgcttcctcctgcagccagtgtggctgtccg tagactacgacaactggagagactgggagggggacgaggagatggagctggcacaggtgg agcactatgcagaggtgagcttcgcgcgccggccctcgggtgcctctgcattctcaggcg tgtttccccgctccccggacagatcgtatagtggtgtttgtgctctgcatgttttgtgga gtgtttgtatttttgtggtttggtttgctttctttgagacagggtcttgctgcgtagtcc aggctgacctggaactcatggtgatcgtcctgcctcagcctcccaagtgctgggatgaca gacctgtgccccatgcttggctctgccctttcttgtgacctttttctctcccgccagctt ttgcagaaggtcagcaccaagggaccgccccccgccatggatgacctggatgtaagtagt gccatccccttgatcccttccagggagcagcccagactgctaagcacgtgaagagcacgt gctccgactaggtgaggtcctggttctcagtccatgttaacaaatttggcatagaagggc atgtgttccttgccaagctttaggataccccagtgaacccaggtatggtggcacatgcct gtaataccagcacccagaaagctgagacaggaggatctgtgtgagattgaggccagcctg gaccatatagtgagacccccatctcaaaaaccagaaacaagaccaaaaaacccaaaaatc cccaggaagactccttcccttccctccactctgctcttcccccagggcagctgcccttgc ccagcgtcttcagggcataggcagcaaagtgctccctggaatcccgagacctggggtgca gggcaggggtgcgagctagtggcctatgttactgtccacagatctaatcctccactgttt gctccccacaagtgcagtttagaaagtcaggtgggaagtgcggccgggggaatgggcatc ttgtggaggcccaccagtgccccgtccccatcctgtcccccaggatgactcggatggcgg tgatatgactggcagtagtctctgagagcgctctatgctggaaggaggccgagatgtctc tgctgctgagcactgtgcctgaccacggcctctctgtcatgccctgctgtgctcagagct tcccagaagtgcttccgtggagctcccttttctccttggattttcttcccagactctggt gtaggtgctgtgcaggtggctggagagtgaggggcatatggaggcccctagcctcctgct gacttatttacaatctctggtctgcttgattacctgagtgtgtatgcgtgtgcaaaagcc agagacacacagatgacaataaatctgtggtacccaccctcggcctcttatgtgtggctc cctgcgagctcctctgggcaggggagggctcccagggtctctggcctcctggatgcagtg agaagacaggctatagggacagccacgagctacactgggccactgggccatcatccctgg agccagcatgcagtcccttctggctctgtacagaaactcctttccgtttccagaactaat cataaccccccacctgctgggtgtcagggtgtcagtctgctgtggaagaagttaggagag ttttcaggggaagaacagaccctgggtttctagtaggggtcacacgcaggtggccaccaa ggccctatgtcgggcaattcatacagcaaggtcacaatgtgggtaccacgtgggtcagac cccagtcaacctacagcatcacaaggacagagctgagtgaatattgatccacatgggaga tgagtcatggggcagggcacagagaagaacaaggcattctgggaaggagggcccacgggc cagggtgatctggccgccacctatgggtttgtgccgggctgggcccctggcccagggtgc tgcttctccggggaggtacacatgctgtaggctgaggccttggcccactcaaaaggaggc tccagccaccaccccagtgtgccttcttcctccagggctgggtccctctctgcctatgaa agcctttaaattagccggccatgtaatggcatgggggttgagcccagggagagctgagct acatccccaggccttttaaatttagaggctgggctcgagcttgtcatctgcctcaagtcc tgaagtagctggctaattgcagtcttttacatgttagactcagaaaacgttggtgagcta ggtatgatgcgcacacctggaatctctcaactgttccagggactggggcagaaggatctc aaattcaagcccaacttgtgcaatttaatgacttagcaagactcaaaatacaacagtctt ggcaatatagtttagtgcaaaggccctgagtttaatccccattaagtactgaaaaaaaaa aaaactgtgacgaggcatggtggcagatacccctactctgaaaacccaaagtcagagatg ctttgaaatccagtgttttaatttttagtttgcccctgggcattgaacccaggccctttg cactgagctatatcctcagccctgttttttagctgattctgtctcgtcctccggagtgct gggatacagacatgtctgcacctactttcccaagttctttgataaaactgtaagtgtctc tcccaccaataggagagcgttttaatcccaaagcctttagatactttttttttttggtct ttttcgtttttatcggtaccatggatcgaactcaccactgcctgcttgcaaggcaggcgc ttatgccactgagctaaatcaccagcccccagcctttagatactttaaaaacaaattttt tgagacagggtctctacactgtgtcgttcagattggccttgagttcactgtgtcccaggc tggctggaacttgtgatcctcctgtctcagcctcccgagtcctggaattatggtttgtca caaatgttttaattttttttgctgttgccagggatggaactcacaacctttcacttgtca gggatgtgcttatagcgctgagctaaatccccagcccttaaatattcttttttttttttt tttttgtctttttcgtttttatcggtaccagggatcgaactcatgactgcctgcttgcaa ggcacgtgcttatgccactgagctaaatccccagccctccttaaatattctttatatact gtagtaatacagtatctaatacttagctcctgtgggcggcttggagccctgaacgacaga aagtgacaactttttatttttatatattttttaaagaggataaaaccaaggaaaataaaa ctaaaaaaccagaataagtgatacaggacttccaaatcttatgaaatcaacaatagtaca gtgcctttgttgtcttcaaaatagctgcagatgccaccttcaaacatactcaaaatcgaa cagaacaggatagaatatatttctaaattttgaggcagggtttctctaaattcataagtt gccccaggctggactcgacctgtcgatcctctccaagtgctgggttcacaagcgtgcacc atcctggccatctatgcggcaagttgttttgtaccagggatcaaattcacgacttcgcac ttgccagacaggtgcttttgccgttgagctaaatcttccggcccctggcaagttttataa cagtcccgaaccaactcaacacgctgcgtttcaggaacactagccaaaccacgcgccgtc ttccttccaacgcgcctgcgcagagacgcgccgcgggtgaagtttgtccccgccgcctcc cgtagccggcgtctgcggtccagtgtccgcgatggcgttccagtgtcagcgcgacagcta tgcccgggaggtgcggcggggccggctgggggcgcggggcagagggcgggagccaggccg gctgactctcgccctcccgccagttttccaccgttgtggtcgcctgctgccccacggagc tgccggccttggcgggcgaggacccgaaggcggcgcggcgcgggttccgggtggtgctgg aggacacgctgctctttcccgagggcggtggccaggtgcgggcccgggctggggccgggg ccggggcggggcggggcggggcgggggggggagtggtggtgtctgcagaggctggggcac atgtgttcagaccgaacgcgcgcctgccgcccagcgcgcgggaggccgaggcggaagctt cgccgcgagggcgggccaggctggactgcgtagtgagagcctggctcagaaacaccaaaa cctacggaatcagcccagtgttactcccggctgtaaagaggagtgacagggcggcggctg ctttatctacgcgtagaataagtcgagagcatgggaaggccgaggcagtgcctgagagag gaggtgccttagagaggtcggggacagagaagacgccgctgccggaaagcgtcccgagga gaaacctgtggccccaggtggcccccaggcctcttgtggtcagcgcttctttgtgcagga atcttgcccggccggatctccgcggtgtcttgcgtttctctagctgcacgtgctctccag taccgtggcgaggcacagagcagtggtgctgagcccagggcagacgtgcctcagtgggct gtttgtgtcaccgaaaagttcaccagcgctggtccagatcccgccgcagccgcgtctctg tgtctgttcaggggacccttgtcttatctttgggctggcgcagtgccttctaagcgcttg accctggctactttcataagggaaggaacattcttgaatcttatcctggtagtaatggag tagtgagaggcaggaaaactcagatcatttcagagacttttctgttttaaatttggatgc aaaataaataaataaatttggagtcagtctcgcttagttacccaggctggcctctaactt ggggttgtcctgcctcagcctgctgactagctgggattacaggactgggttccctgccca gccattttagagattaataaagagaagaatatacgctaggaaacaacagcaaggatacac tttctttgggttttactaaaacctctaaaaagaaaaaacccaaataaaaccactgctgct gtgcttagagtctcttcctgcgtgaattgtgtcatctgttccgaagggcaggctgcacag gagcttaggtggcgtccagaggtgcctgtcatggaccacaggggacccttgtatgccccc ggggctctgggtcaggactgtcttgcggacataccctgcagcaagaggccaagcgatggc tatcagctgccctgttcttgtccagcctgatgaccggggtacgattgacgatgtccctgt gctcagagtgacccgccggggagccgaagccgatcacttcacagagatgcccttggcccc ggggagccaggtctgtgtccgagtggactgggagaggcgctttgaccacatgcagcagca ctcgggtaaggggacaagggcgcgtcacatgtacaggcagttgccatggagattgggatg taatttggggtttcctggagccaacctggaagagaccttctgagtcagcccggattcagc aggatatgacagattggataaaagcaacaggaaccattgaaatacggggtgtcaccatag gccttgggtgtcaccagagtcccccttggtaacagcaccgcctggctgtctcacagcctc tcttgagccgtagggtgcagatggaatgcgattgcttggctccacccttccttagtgccc tggtgtcctggtgttctgtctggaattcacccccatgcctcccaggcggccccttagcac tgtggcctggcactgtgtgtcctggttccggtgctccctgtcctccaggctctgcagcca tgggtgctggcgtctagccactcctctctgttgctgttgcaagaggccaggcatcaaacc aggcttcggccttacaggacctgagcctgtggctcccttggagaggccacctgtgcccgg ggctgtgtggagccataggtctcacctggcagtgcacagcctgtggctgcagcaacatcc cttggctcttgatcaccctggctgccccttcgctctgccccagagtggctgtcttctctt ccccctcacccttggcgtcaccctcagggtcactgcttggcctctgggattgagccccaa gtctggaatgcggggcacctgggctgactgagtgtaggagtgagggaacagaggaacgcc acataccacatgctggaacccgaacgtactggccctgaatcaaggccagcagcttcctaa tgctgttggtttcaagcaggagcctaaagagatgtttttctatggtctgttggctgtttc agaacttggggcagtgaaatggtcaattcattagaaagaagcagcttactaaaaaattaa cttacagccaggtgtggtagtgcaatcctgtaaccccagtacttgggaggctgaggcagg cagatcgctgtgagttcaaggccagcctgagctacatagtgagactttgtctcaaaaaac aaacaagtctctctcttacagtttcaactttatttaattacatgtaccaggataaaaagt atagacttaaattatccttgttttatttattttagaatgagataaacacttttcagcgac ctgccactgctgttttctcttggctctgtcacaggggaccatgtttgtagtgtttatctt cagcctttgctttgcacgcatgttttctacataaagtgcagtcatcctggctcagatgct tgtcccgcagtcagttggtggcatacttgaggaggagaggagcaggggttgaaatcttgc ttcagcaagcggtcgctgaggtcattctgacctcagcagggacctttgctgcatccccca ggcctgcggccacaccttggcaaagtttggagctgagctgcttactgtgcttcctttagg ggtggaggggttgagacgacaaggtctaggtctgacaaggactgaccatgcagtccaggc tggcaccgaactctgcgtccccctgccttagcctcttgagcactggggtcacaggcacgc cccccagctggtggctcactctgctcctgtccctcgctcttgtcacctagggcagcatct catcaccgcagttgccgagcagctatttggactgaagaccacttcatggtgagcgaccag ccctgccctgtctctagatgggttgggagtaggaggtgacagaggggggaggaccagagg gggccacttcaggttgcccaggggaacacaagggcaactgaagcagtgtccgccttcact tgggagagtttggtgtttgggacccagagacccagagtgcgtccagacgccgccactctg gccttatggctttgatcctgtcccctaacacttccctgtgaggcaggaaggatggctctg ccttttggccttcgcacaaagctgcgtccctatccctatttaaatttgaaactggggcct ctgccgctgagtgcccaggctgggcagtgagtgccacggggtaccacacctggccctgga gggtctctgagggttaaaggaaactgttggtctgaggggtttggtggcgagtggctcctg gcagcgccctccttctgggcagggagctgggccgcctgcggagtgccattgagctggaca gcccttccgtgactgcggagcaggtggctgccatcgagcaaagtgtgaatgagaagatcc gtgcgcggctgatggtgagtgtgcgtgagctgagccccgacaacccggaggtggagcagg tgcggggccggggcctgccggacgatcacgcagggccggtgcgcgtagtcaccatcgaag gtgtggacgccagcatgtgctgtgggacccacgtgagcaacctcagtgacctgcaggtgg ggcggggctcctgggcggtggggtagctgcctgcctgcctgaggtggtacacacctgtat gtgacagtgcgcatcttgtggccctaccgtagatcatcaagatcctgggcaccgagaagg gaaagaagaataagaccaacctgctcttcctggctgggcagcgtgtgctgaagtgggtgg agcggagccacgagagtgagaaggctctgacctcgctgctcaagtacgtccgtctctttc tgtctccacccccaggcctgggcccttagctgtgccgtctgcatccgtgggaagactggg ggtgtaggccaggcccacccggagctacctcctcctctgtcccccacttggtcctcctgg gcctgttctagcaccccaggccgggcagcagtgcctccttcctcccataggtgtggggcc gaggaccatgtgcaagtggtgaccaagctccagagctccgtgaagctcctgcaaaaggta actggtccacgggtgtggagaggacccgccccgcctggagtagattttcctgccttggcc ttggcttgagtagatgtgtccaggggatcgggagggaacagtgaggctggggagatggcg ccctgatctgtccccttctgcctgtcaaccaccctgtcccctccatttcagaacaatctg aacctgctcagagacctggccgtgcacgtggcccgcagcctcagggctgatccagactgg ggtggagtggtggcgctgcacaggtgaggagctgggattccagaggcctgagagcccact ctcctgggcttggttgccccagaatttcccagctgggcctggcttccagagtcctgtgtt ggccccctgagctgtgctggctcatagggctgggccgggggtgccccacccagccctgag ccagggtctgggtgcctgggtctcagcctgtgtcctgtgtcgcaggaaggacggcgattc cgagttcatgaacatcattgccaacgaggttggggctgaggtgagagcagcacggggctg ggcctggcgaggccctggggcctttgtggaagcccctcatgggactcggctgggaggctg aggtggccggcattgacagtggccagcggccctgcctcttcctcctcttcttcctcctcc ttctcactgcctcagggttcctgcggtggctcagggggttttgcggcctggggccgggcc ctcactgtctggctgtccctcccttccaggataccctcctgttcctaaccgtgggggacg agaagggggccgggctcttcttactggctgggccccctgaaaccgtagaaaccctgggac ccaggtaaagctcttctgggcttggggcccccatgtgggtcagaggctggcacccagctg tcaccacggggccagtgtggggaggttctggcagacgagggacctcgtgtccccgccagg gctctggcagacagcagagccgagactcagccgagactcagcctggtctgtggctccagg tatcctgcgctcacgttttttggtctttaggacttacagtccttctgctgtggaggacag ctgtgggccccacgcccatcttgaatcctttcgtgtggacatacacctgtcaccagcgtg gtcacccacatgtgcagtgggggctgggcaagccgggagtgctccctcccccagtgctcg tcctttcctggctttgccagcctgcaccctaccttccccagttgccagttttaagaaggg tcccagggctgcccttgggagcttaccttttcccaaagccctttctgtccctcagggtgg ctgaggtcctggaaggaaaaggagccgggaagaaaggccgctaccagggcaaggccgcca agatgggccggcgcatggaggcgcaggcactgctgcagaaacatgcgagattgcggggct tggagggctgagaaggcacatgtgtctactgtggatacacagctgtctgcttctcggtgc caccggggattaaacccagggcctccacaccagctgtgtgtttggcttgtctacttctgt gtttgcttgcgaccaactatggccaggtccctgtgtggccatgtccagttgcagtactcc tgcctcagcctcctgcagtgatgggtgacgggcgtgtgctgctaggccaggctacagggc tctgtgacggcactgatcacatctctgaggactggccccatgaccgtcacctgttagagc cccatcacctgatggaagcgctcgacaggtgtgaccaaagatgtgcgtggtgggcgggga atgtagctcagcagcacaggcacctgcccggcaagcaaagattgtgaatttgatcctcgg tacaaaaaaaaccaagtgaatgccgccgctgggtcacaacagcaagtgggttcatcagac atctgtgcctgctctgcctggcgtttccagtcttcttccacatgaccatggaagggaaat atggacatcaaggcagccaggacagtgcaacccatgacactcagaagattctaggcctgc tgcagagagtgcaagagccatgagctgagtgtgtgagaagccaggaagggggtcctgagg gcattggtggtgtttccttttactaaaacattttcagggcctttctggatcacaccgtat gtcactgcttggtgtggggatccctgcagtagaccccgggctcctgccaggtgttatggt ccactgcaaaaaggcacagaagacaggtggtggagtggggtggcctgctgctcacagtta cacggggacagtggtgagggggtgctggctgactcggaagctggtggtgggggccctcat gctaacggggggcctgtgttgatgaagatgagagagatagccagtcgatgggtttgtcct tttctcaaggtgaagccctgtgttttagttcctaccgggctctgaaggaac
Untranslated Region
Coding Sequence snoRNA |
|
exon position | 1001..1013, 1225..1380, 1425..1737, 1829..1895, 1974..2072, 3404..3493, 3777..3830, 7343..7474, 8725..8884, 10550..10607, 11062..11335, 11432..11562, 11750..11816, 11991..12082, 12285..12339, 12569..12663, 13135..13270 | |
CDS position | 1001..1013, 1225..1380, 1425..1737, 1829..1895, 1974..2072, 3404..3493, 3777..3830, 7343..7474, 8725..8884, 10550..10607, 11062..11335, 11432..11562, 11750..11816, 11991..12082, 12285..12339, 12569..12663, 13135..13270 | |
accession no |