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Cavia_porcellus LOC100723839 | ||
organism | Cavia_porcellus | |
locus name | LOC100723839 | |
chromosome ⁄ contig | scaffold_228406 | |
snoRNA list | SNORD83, SNORD83, SNORD83 | |
snoRNA position | 1229..1304, 1821..1897, 7169..7244 | |
length | 12692 | |
sequence |
cactatgtagcctaggcagccttgagctcgcctagcctcatcctctggtgtgcttggat
tgtagcagtgcgccaccacgcctggcttatttagttttatttattttttattttttttta gcaaatccatcacaggggtagaaaagcggccctcagtacagactctcctcagaccaggca gttgtttgtcagcctgtctgtaggacttaaacttatgagatcgattgtgagagccaatgt ctcatacaaaaaagctcgagaggcatttcagtctttaaagctttgctagctccttacaat gtatgtggtagagtcagacccatttgaaaacttaacaaatgtgccagaaagaaactacca caactatttagttttaactctgcaggccgatttttgttcctgatgcacagaccttggtct cctcctaagggcacgagctgcatcagcccgtttaactttgagctttgcccctggaccatg aagcgcgcctcactcctgacaaacgcgttcctgacataacgtttactcggtcctcaactg gggccagacggttctccctgcgcatgcccagcgatcctccggtcaccttgaccaccgcga caaggaccccgtgggaaccgctggttcccccgtcgcgctgtttgtggctcgcccatagag gggttcccagtgagaacacatgaggaaaaaacccaaacaaaaaatgaagggcgtggaaaa gagtggggcaagggaacacgtttgtcgtcgttatgtcttttgttattggaggtagcagag gagttaagagtggctttacaattttttttcggacaggcattttccaaaggtagcccgggc gcgcggaactacagtatttccgaaggtcctcttccggcaccttgcgcctgcgctctggca ggcgtaaaggcgggcggccgcggtagagggaagcctggaaccggaagtgaaggttgattc cctccttcgtcgctgtttctgccgccatacgcgcttgccctGCTCAGGTAAGCTTTGGCC TTCACTACCATCCGCCTCCATCTGCGGTTCTCCTTGTTCATCCTGCCACGCGGGTTCCTG ATATTTCTTGCTCGGGCGATGGTCTGGTCGCTGGGGCTTACTTGGgtagttattttcatt gctttcattcttttctagagcaaagagctgtttggggggaggcagggaagaaaggggggc ccaaaatccaagatggtggtaccggcgccattgtgttccttttcttcgctcctggctctt ggagtgggtcactcccgacccgaggctccagcgactgcgaggggcggcgctcggcgtccc ttgctgcgggctgtttgtggagggcggggccctcgtcaccttcccccgggcctgccctag gccgaggtgggatgaggaggagcccgcctgtggggccggttggacctgtctcgccggcct tctcgtcttatctgaaactgtttcgaaatggggatatcattgtttttcggaagatatttt agcagattaggagcccaagcgtaacgtgagactgcttggtaaacattttgttaaaagctg gaaaggggatactgtaccttttcattaagctgcttcgctgcagtgacttaattcttgttt tatattttgttgctattttgcagcgctggggactgacgcttgaccccctggcgcgctagg cgagcacgccctgagctgcgctccgtgtctttgttttgtgttgccactgaggcatttttc tttcccttgctccccaccactgactgtacaggatttcctgagcattggaagccgctgctg aggagtgggaggtgcacggcagccacatgatgttctgatctgagacgtgagcgctctgcg cagtgctgaccctgatctatcaccctggactgatggctgccgtgcagggatcagcgcaga gggatgcagggagagctcaggatcctccctaggatgttccaggactgctcatttccattt gcacctctcctaagtgctagatctttttcagcttctcgtgatgcttttttttcagtgtta ctataaagaaagtttttaaacattaaaaaaaaaatttttttttaatttttacttttgaga ctggcgtttcactgtgtaggtcaggctggctttgacctctgagggccatcctccagcctc agcctcagcctccggagtgctggggttacaggtgtgcacccctacactggctcagagtat ctctaaattgtcttcgtattgagctggtttgtgctactgtgagccacagtcttcctggca tccatgttcgcggaagctactttttacatttttctattacagctgcttttcatttgtagg ctttgtagctgtgatttttcttcccagctgttgtagtttagggaaagtaggaagggcgag gcagtggaaaatggtgaaagtctgctcctgactgatacgttttgctgttttgttttgttt tcctagCTCTTCTGTCAGAAGTATCTTTCTTCCCCTTTGCTTCCTGCACCCCCTGCTTTT CCCCCTGGTTTGCACCTGTTCTGGGAGACCTCACCCAGAGCCCCCTCCCCGCGCCTCTGC CGGCCCAGTGATGGCAGAGAATGATGTGGACAATGAGCTCTTGGACTATGAAGACGATGA GGTGGAGACGGCAGCTGGGGGAGATGGGGCCGAGGCCCCTGCCAAGAAGGATGTCAAGGG CTCTTACGTCTCCATCCATAGCTCTGGTTTCCGCGACTTTCTGCTCAAGCCAGAGTTGCT CCGGGCCATTGTTGACTGTGGCTTTGAGCATCCCTCAGAAGgtaaattttctgttagcct gagagttctccttgggcacttcaggggctcctggacaaagatggttttcagatggtgaag attaacatttagaatagtacagggcacaagtaccaacaattgtcttaataacagaaaggt ttgtttagtctttcctgatggcaccaaagtgccagtaatccagaaccagtttagatggca gactgccaatgtgcctggttttttcttcttgtctgtttgttttttttaactttgcggttt tggctattaagttttcagaaaggacctagtcaggcctttagtttccccttttgggccagg ccagagctggtctctggaaacatttttgactggcctagaaacggctggcttttgggtcag gtaccaagtgcttcattttgttcaaggttgcagggttacgtgacccaaagcatggcaacc taagtaggcgagatggcctgtggcaggcattgaaatgtcacggattgttacagtttaaga aacataaggacagagccaggagcactgaaggtgagcttttgggaggcgcaggaggtcatc agctcctctgggagctggacctggaggacgggggctcggacaagctaggggggtttgatt tggcattaacgtgaccagaggtcagagaggtgcatagggcctgaaagtttgcaagaggca cttggagaactgagtgggaaaacacggctgtggtacaaaaggtggtgaagttgtttggag acaagtcttgatttctttcttttctttcttgtagTCCAGCATGAGTGCATCCCTCAGGCC ATTCTAGGCATGGATGTCCTGTGTCAGGCCAAATCAGGCATGGGAAAGACAGCAGTGTTT GTCTTGGCCACACTGCAGCAGCTGGAGCCAGTGACCGGGCAGgtgtgcttggggagtcgg gagggcgcttgggttaggcccgcatgggatgggagcctggccccgctgcagctcttcaag ctatgagcaagcgccttgccagctagcaggaatattctgttaagtgtggatttaattatt cagacctcagcgctgacgtcatttggccctcacttccccagagggaatatcgaggggcat gtgcttcctgtgactagggcgacctgttttctccccagGTGTCCGTACTGGTGATGTGTC ACACTAGGGAGTTGGCTTTTCAGATCAGCAAGGAGTACGAGCGCTTCTCTAAATACATGC CCAATGTCAAGgtaagcctgccagaagaacccagggagaatatgggtgtgggggcacatg ccctggaaactggaacaggtgcatgaaaactcctgcctacttgtaaatggcaggaaactc ctgcagactcgagtgtgcaagagattttacttttggtttccattacaagctcagaggtgc cagctgtagtttaatttggagaaactagtttgcattggcttaacacagtgcagatacacc tgtgctgcatgagagtgtgtgattgctgtgctgatccgtgccacagcagggggttcagcc tcatttgggaacttgctggaattgatcagctgggtgtgaaaataccaccgcaaaggcaat tcccgtgcagctagaggtgacaggcactggcttatgatttcctgtcatgctggcttcagt gaagaacagcgctttctgttccagttgttacaagttttctgttagtactttatagtttag aggaactaggagtgtgagagtcatagccctaaactgaacgtttcttaaaaatcaaacaag tagttgttcttaattgacgtcttactggggaaaagatgtgttttcccagctgtaacccat tttcactgaaggtgatcgcttaccccaccccagtgtagccgcctggtgcctgctgggcag gtgcccccacccctcctgggcagtgttttcttaatttgtcagtttatagtactttgtgac tcctttccacggaacattagttggttcacacttgtctgatgttctgaaaaccgcttattt aacccttgagatgtgacttgaggccaaggaagctgggcagtgtctgtggtgtacttgctg cctttgcgccgagcaggaaggtgttcacatttgtgttgagttcagcagcgagccagagtt gcattctccctctgcagccccagcttagccaccctcgggtcactcaagggactcggggtg ctgcggtccaatgagactgggcagtcatgcagggcactctagtgcctgctatgggaggct caggcaggaggaccacttgcacctaggggtgaaggccaccctgagaaacacaaagagatt ctgttgaaaaaccacaaaagccagtgcacatggcgctccctaactcgcacttaatcctgc tcagatccatcctgggtttgtgtgtcactcccttagtgtcttgcttgctgttcctcctag tatttcatatcggctacaatttatatttcaaagtgtaactgattgaagttaatcattcct ggcaggaatccttcctgggtgggtgctcctgacctcctggtgtgctgcaaatgtcactca ttggcggccttgggtttaccctggaaggaaagacttccccagaatggggatttggatggt ttgatcccttgactgtttttaccctttgaagctgaaaggcagtttctggaggtgtcccta tactatgaattaaggctcaggtctttatcagctgttctcctagtggtttaatcatgggta ataaatacacgtagtttaaatcagtaactgagactttatgtgatagttcttttagaacag cttgatgtttcatgtttttttgcggggtgtgtgtgtgagtgaaggtaatacaggaggtta aatctggggccttcaaactgagtacattctcagtacctcctttttaaattttacttattt tttgtctttttgagacagggtctcactgtgcagttcaggctggcctggagctcactttgt agcctaggctggtctcagaacttgcacagtcctgcgccagcctcccgagtgctacgatta caggcatatgcagacatgcctggcccctcagctctttttgtgttttgagacaaagttttg ctaggctgttcagatggcactggaactggtaatcctcctgcctcagcctcccaagtgctg ggattataggtgtgcactgtgcctagctcatgtgcttttgcttgtgtgtctatcaggttg tgtgtgtgttttattggtacattttagatatacataatgataacattcatcctaaggtat ttgtacttgtatgtgatacatctttttttgtaatttttaaaattttttcatcttggggct ggggatttagctcagtggcataagcgcctgccttgcaagcaggcattcgtgagttcgatc cctggtactgataaaaacaaaaaagacccccccccccaattttttttttttcatcttgct ttttttccccatcatcctttccagcccctcttcccctccttatttacaaaagctttgttt ccatttttttcttgtgctgtctttttctcctctcacctgcacatgttcttctcatttccc agtatctgttagacgtactagtccttgtttatttattttcattggtaccggggatcgaac tcacaaccatgcacttgcaaggcaggcacttatgctgctgagctaaatccccagccccac tagtcctcatttatacattgagtttctcacaccagggagacggtgcagcattgacacatg cgtgtgccgtttatttcatggaagttgcatccgttgagctagaaatggctcaggctctcc cgagtgcttttcgtggcactcggtgatgctttcttgctgtccttatccttaaactgaccc cttagagtcctgagaagactacgcttaggtcaggacacaggcacttgatgctttcacatg gctgggaaactcaccttggttgtcacctcagtatctgggcacccataggaattttggtac tggggactgaactcacagccttgtgcttgtgccactgagccgtatccctggccgatttct taagttgttcattgtgaagtgtgctgagttgattagaggagtcctcctgacagaatggga ggtgggatttccttccttgtgagactgtccctggcctgcagGTGGCTGTGTTTTTCGGTG GTCTGTCTATCAAGAAGGATGAAGAGGTGCTGAAGAAGAACTGCCCCCACATTGTCGTGG GAACTCCTGGCCGCATTCTTGCCCTGGCTCGAAACAAGAGCCTCAACCTCAAGCACATTA AACACTTCATCCTGGATGAGTGCGACAAGATGCTTGAACAGCTCGgtgagtggcggctgg gaggtggctgtctgggagatgcctctggtgccagatgatgttcgttggctgcaggagcac ttggtgcgaggacgactgtttacctatcacccatgcctgatggctcagagcgccctgtcc ctagactggggggtacgcgttgtttcggtggtgtgtgggactgaacccagggcctggtct ttgttcatctggacttttcctttgtaattttctgttctggcagACATGCGTCGGGATGTC CAGGAAATTTTTCGCATGACCCCGCACGAGAAGCAGGTCATGATGTTCAGTGCTACCCTG GGCAAAGAGATTCGTCCAGTCTGCCGCAAGTTCATGCAAGATgtaaatacccttctacct tctctccttccactccccgcccgctgagtcctcccctcctcgccctcttcctccagactc ccgtcctcagaccccagaggaggcagtgccgtcgggagcgatgactcctggaagagacag agaggcagagacagctagcgctagggtctgcgccaaggctagggaaactccggaagactt ggtcgggttacagagagcggggagcgggccaccttttccacccggcggcagtcctgaacc agttctcccttggcggagggcaggttggctgccctcctgcctcccgtcatcttcgcagcc ccatgcagccacgcacctcaaggtggcagcgagcatccggcttctgctcagactcacagc tcccaggcaggagagcagagagggacagacagcaggcagggcccagccgtgaagaagagc agctcagaggagtgtccctcccaccccggggcgggggcctcgggcccccagcccccaccc ctgcccttcccgcccacccctcctggcacccacaccatcggagcctcggtccatggcgac gcgagctggcagcaagagaagcttcatggcgacgcgggagtgcgacacaccgagctgtgg atggcggcggcggaggccgcggggagcctgaccaggaagcggaggaccaaaccagctctt tttctgttcctggtttttttcctgaacctaacaggagctgcgccccgagtgcccccatac atgttggggaggggtgtcctaagtggggtggtggattttttttctttaaaaaggttattt ttaaattctcagtggagagggtggggagaggtgcagtggaacgctctcctggaccatgag caagcagctgtgagggtcgggctgggtgcagccgtggagcagcggggctgttcctccccg cgtgttcgtccttggggtgatggagtttatagttctgagtgggccagaattgggtgtgag ttgcgtttagagagcctggcttgctggcttgcttctccaggtgtccacttttttcctgtg agacacagaccccttccagtcttgatgccctgtatggtgtgaagacaccgggtcctccaa gacgctacagaggccaggggtgtcgggggttggagctgccctttgtcagttcctgactgt tttatgctactctcctccgcccccaggggttgagtttgtttttatttttagtttttagtg gatgtgtatttgctgctctatttgcttttctgttagcatcaagtactgatagtttccctg taaacctgttgatggttttaccagtagagagcagtgtcgcccacatgagttgcttgtggt ctgggagcaagctgccactcatctccagtaatttttctctttaaaatgcgcttgattaca tccactgtagccctctggtcttggaggcatctgctccctcaagtgcatgagactgtagtt tggagaactaatgaagccgtcggccgaggtttctggccccaggactgtttcctgtggtcc tcggtgtcaggtcacggcctcctctgtgcctcctctgtgcgctgctgttttcttcctcct acttcattggaggtgccggcttctcggcatggggtggtttcactgctctgttattttgtg aatttttcccatgagtattcatttgggggcagtcttaaaattcaactgatgggaagcaga tgaggtcacgtgaaggaccacaggaaaatgggtatttttggtggtggcggggtttccagt ctctcctcccatccccccatggggtgtattggagatcagcttcctccacccccccaggtt taacccccccactctgccctcctcccgtccccaccccttcctccctctcagCCAATGGAG ATCTTCGTGGACGATGAGACCAAGTTGACGCTGCACGGGTTGCAGCAGTACTACGTGAAA CTGAAGGACAACGAGAAGAACCGGAAGCTCTTTGACCTTTTGGATGTTCTTGAGTTCAAC CAGgtcagtcgttcaggtccagttgggggtgaggctgggccccttctccagctgcgccag aaacctgtggcagagtagtcttttttttttttttttttttggtctttttcgtttttatcg gtactagggatcgaactcgcgactgcctacctgcacggcaggcgcttatgccgctgagct aaatccccagcccctgcagagtagtctttattgagggtgcatgcagtataaggtttcctt ttttggtgccaggggtcaaacccacgactgtgcctactgggaagtccctaactgaactgt gcccaactgtgagaaatttccttcttggtggtgtagacattgatcccaggccttcacagc aattcacgtccccagtcctttagggttttacccaggccacctttgacctatgatccgcct gcctcggcctcccagggtactggattacagacagggtgcagtgccatgtgtgacagggaa atcctctcagagggaactgagttgagcaaggtggaaggtgcttttgtttcctggctgaag agataagatagatacgagagagagatactgggtccttcaagacggtacagaggccagggg gtccgggggcttggagatagacaagagagcttaaggaagataaccctcagagtaaaatcc cagggggagtttataagtgtgtaagaagcggttcgagtttggaaaggcgtgcattcttca gtggagaggccagtctgtccttttacctggtgtggtctgtccgcactaaaaactgcgctc tggagctaaatcgagtttccttagatttagtgttgtgccgagggagagtcaagagtctga tcttcgcggagcttttcttattcctagcgtgtggccgagaggcagcctcctgtcctccta ggcctggcgatgtgggtttctcttccttgcgccgcctcagggctgcccactgaggaaaat ccagccccggaaggctcttatctctagtgcagaagtgcaaatgcgtgatggaaataagag gaccgcgggccttttagagtaaaattcctgaaaatccgcaccataacttgtctcccgccg tggccgccgcgggcccgcagGTGGTGATCTTTGTGAAGTCTGTGCAGCGCTGCATCGCCC TGGCCCAGCTGCTGGTGGAGCAGAACTTCCCGGCCATCGCCATCCACCGCGGGATGCCCC AGGAGGAGAGgtgcgcgtagtgggggcggcgggctctggggaggaggagccgggagagaa ggcactcaaccatgtttctcatttcctctctcacaagGCTCTCTCGGTATCAGCAGTTTA AGGACTTTCAGCGGCGGATTCTCGTGGCTACCAACCTGTTCGGCCGGGGCATGGACATTG AGCGGGTCAACATCGCCTTCAACTATGACATGCCCGAGGACTCGGACACCTACCTGCATC GGgtgagcccctggcccaggggctcctacgtctctcctcctctccctgggtgcctccccc tccgggtcttctagtgttccctttgttgccttcagGTGGCCAGAGCAGGCCGGTTTGGCA CCAAGGGCTTGGCCATCACGTTCGTGTCGGACGAGAACGATGCCAAGATCCTCAATGACG TGCAGGACCGCTTTGAGGTCAACATCAGCGAGCTGCCGGACGAGATCGACATCTCCTCCT ACAgtgagtgtggtgccctggaagcagccgcccggccgcttagtgtccccttgtcctgag cgtatgggtcgtgggtcccttgcatagggaggggtgcctgatgcacctgggacttgcccg cttccttcctcctggtctttgatggctgttgggagagttttgacgtcctgtgggaccctt cttcccgccctctgtcaggtggtttctcctccttctcgcccaagtccacccctgaccctg cccagtcacaggcctgtgcaggtcctcgcctgggtgccccgggtttggcctcagctcact cgcactcatgttctctgcagTTGAACAGACTCGGTAGAGGATGCGCCCTCGCAGACTGTG CCAGGACCTCTGCAGGAGAGGACACTAGGCGTGGGGGTGAAGGAGACACTACTGCCACCT GCCCGACGGCCCCCACCCTGTCCCGAGCTTTCTCCTTTTGCATCACCACCACTCCTAAGC TCCGTTCCCAATTTATCAGCATTTTTTTTTAACAAAACTAAAAATGAACACCAacgtgcg tgtgtgtggtgtctgttaagtctgtgcctttggtccttcattgtgtgtctgagcctggga cagttctttggggctgtgagcccagccttggggtagggtcagcaggccgacccgcgtctc tgccctcctcccgccttccctgtgttctcctctgggtgggggctgggcaggaaggcgggc aggctgtttgcagtgcctaagggcgctgggggaagtgaggcatctcccctgttcctgcag cttgtgccagtcaaactccgggcctgggcctccatccccatcctgcccgtgcaggatggg agcagctctggctgctgctcggggctgaagcccttggaagaagtgttgcagtggacgccc ctgcctcccctagagcttttctcatgggcttgcagattgaacccagggaacactgagttt ttctgctttttaaagtctgaggcagtttagctaagctgtccaggtctggggggcttcctg ctgcagcaagcacctgcacctgcctctgcttgaagcttctgggctcagccatagcggggc tgcaggtggccttgctgccccaggggctccagctgtctgcccctgtggggatgagtgggg ggagggagctgagaggtttgttttgggggggggtgagggtgaagcgctggagttgaggtg cagcagggatccaaggggttcccatgctgtgccagcacagatgactcacccctcaccctt gttgccacctaccctgggagtgacctgtttctcccaagagttgagctcacctgttttttc atgctggccttggggttctggacccctctacggggtccctgagggaccaagggcctagga ggcctcagcaaaggtgacaaccaccagtgagcccgggggaggcctggggcttgctgtagg cctgtcctcacttccgggtcactggccaggccctgcccctgcccgggctgccccctcctt ccgggctgctcaggtggagcctggtcttaaggg
Untranslated Region
Coding Sequence snoRNA |
|
exon position | 1001..1124, 2466..2800, 3574..3701, 3938..4030, 6941..7124, 7363..7481, 9351..9482, 10580..10689, 10777..10921, 11015..11162, 11480..11692 | |
CDS position | 2590..2800, 3574..3701, 3938..4030, 6941..7124, 7363..7481, 9351..9482, 10580..10689, 10777..10921, 11015..11162, 11480..11496 | |
accession no |