Family: snoU36a

CLUSTAL W (1.83) multiple sequence alignment A_tauschii300564 ------------------------------------------------------------ A_tauschii300309 ------------------------------------------------------------ A_tauschii300275 ------------------------------------------------------------ A_tauschii300176 ------------------------------------------------------------ A_tauschii300368 ------------------------------------------------------------ A_tauschii300376 ------------------------------------------------------------ A_tauschii300403 ------------------------------------------------------------ A_tauschii300407 ------------------------------------------------------------ A_tauschii300414 ------------------------------------------------------------ A_tauschii300418 ------------------------------------------------------------ A_tauschii300567 ------------------------------------------------------------ O_sativa300059 ------------------------------------------------------------ O_sativa300155 ------------------------------------------------------------ O_sativa300060 ------------------------------------------------------------ P_patens300007 AGGCTGTGATTAGAAACTACCCGCGCTTCTGAGAGGAAACTCAGTGAAGCAAAGAGATAA C_porcellus300183 ----------------------------------------------------------AG C_porcellus300192 ----------------------------------------------------------AG C_porcellus300358 ----------------------------------------------------------AG C_porcellus300486 ----------------------------------------------------------AG C_porcellus300589 ------------------------------------------------------------ C_porcellus300622 ----------------------------------------------------------TG C_porcellus300779 ----------------------------------------------------------AG C_porcellus300800 ----------------------------------------------------------GG C_porcellus300893 ----------------------------------------------------------AG D_rerio300212 -----------------------------------------------------------T D_novemcinctus300086 ----------------------------------------------------------TT D_novemcinctus300185 ----------------------------------------------------------AG D_novemcinctus300225 ----------------------------------------------------------AG D_novemcinctus300246 ----------------------------------------------------------AG D_novemcinctus300265 ----------------------------------------------------------AG D_novemcinctus300286 ----------------------------------------------------------AG D_novemcinctus300306 ----------------------------------------------------------AG D_novemcinctus300390 ----------------------------------------------------------AG D_novemcinctus300395 ----------------------------------------------------------AG D_novemcinctus300421 ----------------------------------------------------------AG D_novemcinctus300447 ----------------------------------------------------------AG D_novemcinctus300455 ----------------------------------------------------------AT D_novemcinctus300612 ----------------------------------------------------------AA E_telfairi300049 ----------------------------------------------------------AG E_telfairi300097 ----------------------------------------------------------AG E_telfairi300110 ----------------------------------------------------------AG E_telfairi300112 ----------------------------------------------------TGCTGCAG E_telfairi300233 ----------------------------------------------------------AG E_telfairi300240 ----------------------------------------------------------AG E_telfairi300316 ----------------------------------------------------------AG E_telfairi300408 ----------------------------------------------------------AG E_caballus300023 ----------------------------------------------------------AG E_caballus300085 ----------------------------------------------------------AG E_caballus300149 ----------------------------------------------------------GG E_europaeus300112 ----------------------------------------------------------AG A_tauschii300564 -------------TGGCAGTGATTTGAACCTTACCCGTGCTTCT--GAT-TAATTCATGA A_tauschii300309 -------------TGGCAGTGAC------CACACCTGCGCTTCT--GTT--AATCTGTGA A_tauschii300275 -------------TGGCAGTGATTTGAATCTTACCCGCGCTTCT--GAT-TACTCCATGA A_tauschii300176 -------------TGGCAGTGGTTTGAATCTTACCCGCGCTTCT--GAT-TAGTTCATGA A_tauschii300368 -------------TGGTGGTGATTTGAATTTTAAC-GTGCTTCT--GAT-TAATTAATGA A_tauschii300376 -------------TGGCAATGGTTTGAATTTTACCCGTGCTTCT--GAT-TAATTCATGA A_tauschii300403 -------------TGGCAGTGATTTGAATCTTACCCGCGCTTCT--GAT-TAGTTCATGA A_tauschii300407 -------------TGGCAGTGATTAGAATCTTACCCGCGCTTCT--GAT-TAACTCGTGA A_tauschii300414 -------------TGGCGGTGATTAGAATCTTACCCGCGCTTCT--GAT--AACTCGTGA A_tauschii300418 -------------TGGCAGTGATTAGAATCTTACCCGCGCTTCT--GAT-TAACTCGTGA A_tauschii300567 -------------TGGCAGTGATTTGAACCTTACCCGTGCTTCT--GAT-TAATTCATGA O_sativa300059 -------------TGGCAGTGATTTGACATT-ACCCGCACTTCT--GATCTAATCCGTGA O_sativa300155 -------------TGGCAGTGATTTGACATTTACCCGCGCTTCT--GATTTAAACCGTGA O_sativa300060 -------------TGGCAGTGATTTGACATT-ACCCGCGCTTCT--GATATAATCCGTGA P_patens300007 CATGGTTAAATTTCTAGAATGGGCACTG-TTGAT--TGGTGTCC-AAAACTGGTCAATGT C_porcellus300183 CCTCATTCCAGAT-TAGAATGAGCACAG-TTGAT--TGGTGTCC-AGGACTGGTCAGGGT C_porcellus300192 CCTCGTCTAGGTT------AGGGCACTG-TTGAT--TGGTGTCC-AAAATTGGTCAGCGT C_porcellus300358 CCTCATTCTAGAT-TAGAATGGGCTCTG-TTGAT--TGGTGTCC-AAAATTAATCAATGT C_porcellus300486 CCTCATTCTAGAT-TAGAATGCGCATGG-TTGAT--TGCTGTCC-AAAACTGGTCATTGT C_porcellus300589 -TAAATTGAAAATCCAAAATAGGCATTG-TTGAT--TGGTGCCC-AAAATTAGTTTATGT C_porcellus300622 CCTCATTCTAGAT-TAGAATGGGCACTGGTTGAT--TGGTGTCCCAAAACTGGTCAATGT C_porcellus300779 CCTCATTTTAGAT-TAGAATGGGCACTG-TTGAT--TGGTGTCC-AAAACTGGTCAATGT C_porcellus300800 CCTCATCTAGAAT-------GGGCGCTG-TCAAC--TGGTGTCC-AAAATTGGTCAGTGC C_porcellus300893 CCTCATTCTAGAT-TAGAGTGGGCACTG-TTGAT--TGGTGTCC-AAAATTGGTCGGTGT D_rerio300212 GCCAAGCAGAATTTCAAAACTGGAATTACTCAAATAGAGCAAGT--TCCTCAATCTGCAA D_novemcinctus300086 TTAAAAAATATGT-GAGAATGGGCACAG-TTGATCGTGGTGTCC-AGAATTGATAAATGT D_novemcinctus300185 CTTCATTCCAT---GAGAATGGGCACAG-TTGATCATGGTGTCC-AAAATTGATAAATGT D_novemcinctus300225 CCTCAGTCCATAT-GAGAATGGGCA--G-TTGACCATGGTGTCC-GGAAGTGATAGATGT D_novemcinctus300246 CCTCATTCCATAA-AATAATGGGTACAG-TTGATCATAGTGCCC-AGAACTGCTAA-TAT D_novemcinctus300265 CTTCATTCCATAT-AAGAACTGGCACA--CTGATCATGGTGTCC-AGAATTGCTTA-TGT D_novemcinctus300286 CCTCATTCCATAT-GGAAATGGGCACAG-ATGATCATGGTGTCC-AGAA-----AAATGA D_novemcinctus300306 CCTC-TTCCATAT-GAGAATGGGCACAC-TTGACCAGGCTGTCA-GAAATTGTTAA-TGT D_novemcinctus300390 CCTCATTC-ATAT-GAGAATGGTCACAG-TTGATCATGATTTCC-AGAACTGCTAA-GAT D_novemcinctus300395 CCTCATTCCTT---GAGCATGGGCACAG-TTTATCATGGTGTCC-AAAATTGATAAATGT D_novemcinctus300421 TCTTATTCCATAT-AAGAATGGGGACA--GGGATCATGGTGTCC-AGAACTGATAAATGT D_novemcinctus300447 CCTCATTCCATAT-TAGAATGGGCACAG-TTGATCATGGTGTCC-AGAATTGCTTA-TGT D_novemcinctus300455 CCTCA-TCTGTAT-GAGAATGGGCACAG-TTGCTCATAGTGTTC-AGAAT-TGTTGATAT D_novemcinctus300612 TACCGTTGTAGGCAGATGATGGACACAG-TCATTCAGGGTGTCC-AGAATTGTTAA-TGT E_telfairi300049 CCTCAGTCTGTGA---AAGTGGGCACAG-CCGATCATGGGGTCT-AGACG-GGCAGTTGT E_telfairi300097 CCTCAGTCTGTGA---AAGTGGGCACAG-CTGATCACGGTGTCC-AGACA-AGCAGTTGT E_telfairi300110 CCTCAGTCTGTGA---AG-TGGGCACAG-CTGATCATGGTGTCC-AGACA-GGCAGTTGT E_telfairi300112 CCTG--TCTGTGA---A-GTGGGCACAG-CTGATCCTGGTGTCC-AGACG-GGAAATTGT E_telfairi300233 CCTCAGTCTGTGA---ACCTGGGCACAG-CTGATGATGGTGTCC-AGACA-GGCAGTTGT E_telfairi300240 CCTCAGTCTGTGA---AAGTGGGCACAG-CTGATCACGGTGTCC-AGACA-AGCAGTTGT E_telfairi300316 CCTCAGTCTGTGT-GCAAATGGGCAGAG-CCGATCATGGTGTCC-AGAAT-GGCAATTTT E_telfairi300408 CCTGAGTCTGTGA---AAGTGGGCACAG-CTGATCACGGTGTCC-AGACG-GCAG-TTGT E_caballus300023 CCTCATTCCAGAT-GAAAGTGGGCACTG-TTGTTCATGGCATCC-AGAAATTATTAATGT E_caballus300085 CCTCATTCTAGAT-GAAAATGGGTGTTG-TTGCTAATGGTGTCC-AAAAATTGTTATTGT E_caballus300149 CCTCATTTTAGAT-GAAAATGGGCACTC-TTATTCATGGTGTCC-AGAAATTGTTAATGT E_europaeus300112 CCTCATTCTAGAT-AAAAATGGGCACTG-TTGATTTAGGTGTTC-AGAAATAG---ATGT A_tauschii300564 AGGACAAGGGAAAA----CATGGTTGAATTTCTTAATATGAGGCA--------------- A_tauschii300309 AGCACAAGGGAAAA---CAGTGGTTGAATTTCTTCAAATGAACTA--------------- A_tauschii300275 AGTACAAGGGAAAA----CATGGTTGAATTTCTTAATATGAGCCA--------------- A_tauschii300176 AAGAGAAGGGAAAA----CATGGTTGAATTTCTTAATATGAGCCA--------------- A_tauschii300368 AGTACTAGGTAAAC----AATGGTTGAATTTCTTAATATGAGCCA--------------- A_tauschii300376 CGTACAAGGGAAA-----CATGGTTGAATTTCTGAATACGAGCCA--------------- A_tauschii300403 AGTACAAGGGAAAA----CATGGTTGAATTTCTTAATATGAGCCA--------------- A_tauschii300407 AGTACAAGGGAAAA----CATGGTTGAATTTCTTAATATGAGCCA--------------- A_tauschii300414 AGTACAAGGGAAAA----CATGGTTGAATTTCTTAATATGAGCCA--------------- A_tauschii300418 AGTACAAGGGAAAA----CATGGTTGAATTTCTTAATATGAGCCA--------------- A_tauschii300567 AGGACAAGGGAAAA----CATGGTTGAATTTCTTAATATGAGGCA--------------- O_sativa300059 AGCAAAGGGAAAAA---TAATGGTTGAATTTCTTAATATGAGCCG--------------- O_sativa300155 AGTTAAGGGAAAAAA-ATAATGGTTGAATTTCTTAATATGAGCCT--------------- O_sativa300060 AGCAAAGGGAAAA----TAATGGTTGAATTCCTTAATATGAGCCA--------------- P_patens300007 GG--CTGAAATTGTC---ACAGGTC--GTGCTTCCATCACAGTAAA--TGTTTACAG-TG C_porcellus300183 GG-CTGAAACTGGGA--TGCAGGTCACA--CTTCCATCACAGTAAA--CATTTATAG-TG C_porcellus300192 GG--CTAAAACTGAG-ACCCAGGTGT-ATGCTTCCATCACAGTAAG-TGT-TTATAG-TG C_porcellus300358 GG-CTGAAATTGT----CACAAGTCATG--CTTCTATCATAGTAAA--TGTTTACAG-TG C_porcellus300486 GG-CTAAAATTGAGACACACAAGTCATG--CTTCCATC--AGTAAA--TGTTTACAG-TG C_porcellus300589 GC-CTAAAATTGAGA--CACAGGTC--ATGGTTCTATCACAATAAA--TGTTTACAG-GA C_porcellus300622 GGGCTGAAATTGT----CACAGGTCATGCCTTCCCTTCACAGTAGA--TGGTTACAGGTA C_porcellus300779 GG-TTGAAATTGT----CACAGGTCGTG--TTTCCATCACAGTAAA--TGTTTACAG-TG C_porcellus300800 AG--CTAAA-TGGAG-ACACAGGTG--ATGCCTCTGTCATAGTAAA-TGTATCACTG-TG C_porcellus300893 GG-CTGAAATTGAGA--TACAGGGAATG--CTTCCATCACAATAAA--TGTTTACAT-TG D_rerio300212 GG--CTAGAAAAACG---CCAGGTT---TGCTTTCATCACTGTAAACCCCATTGCAG-AG D_novemcinctus300086 GG--CTAAATTGAGA--CACAGATT--ATGCTTCCACCAGAGTAAA-TTCATTGCAG-TA D_novemcinctus300185 GG--CTAAATTGAGA--CACAGGTT--ATGCTTCCGTCACAGTAAA-TTTATTGCAG-TA D_novemcinctus300225 GG--CTACAATGAGA--CACAAGTT--ATGCTTCCATCACAGTAAA-TCAAATGCTA-CC D_novemcinctus300246 GG--CTAAATTTAGA--CACAAGTT--ATGCTTCCATCACAATATA-TTTATTGCAG-TG D_novemcinctus300265 GG--CTAAACTGAGA--TGCAGGTT--ATGCTTCCATCACAGTAAA-TTTATTTCAG-TG D_novemcinctus300286 AG--CTAAATTGAAA--CACAGTTT--ATCCGTCCATTACAGTTAA-TTTATTGCAG-TA D_novemcinctus300306 GG--CTAAATTGAGA--CATAGGTT--ATTCTTCCATCACAGTAAA-TTTATTGTAG-TG D_novemcinctus300390 GG--CTAAATTGAGA---ACAGGTT--GTGCTTCCATCACAGTACA-TTTATTGCAG-TG D_novemcinctus300395 GG--CTAAATTGAGA--CA--GGTT--ATGCTTCCATCACAGTAAA-TTTATTGCAG-TG D_novemcinctus300421 GG--CTAAACTGAGA--CACAGGTT--ATGCTTCCATCACAGTAGA-TTTATTGCAG-TG D_novemcinctus300447 GG--CTAAACTGAGA--GGCAGGTTTTATGCTTCCATCACAGTAAA-TTTATTGCAC-TG D_novemcinctus300455 GG--CTAAATCAAGA--CATAGGTT--ATGCTTCCAAAACAGTAAAATTTATTGCTG-TG D_novemcinctus300612 GG--CTAAATTGAAG--CATGAGAT--ATGCTTCCATCCCAGTAAA-TCCATTGCGG-TG E_telfairi300049 GG--CTGAAAAAATG---ACAGGTT--TTGCTTCCATCA-TGTGGA-TTAATTTCAG-TG E_telfairi300097 GG--CTGAAAGGATG---ACAGGTT--TTGCTTCCACCACTGTGGG-TTAATTTCAG-TG E_telfairi300110 GG--CTGAAAGGATG---ACAGGTT--TTGCTTCCATCACTGTGGG-TTAATTTCAG-TG E_telfairi300112 GG--CTGAAAGGATG---ACAGGCT--TTGCTTCCATCACTGTGGA-TC-ATTTCAG-TG E_telfairi300233 GG--CTGAAAGGATG---ACAGGTT--TTGCTTCCATCACTGTGGG-TTAATTTCAG-TG E_telfairi300240 GG--CTGAAAGGATG---ACAGGTT--TTGCTTCCACCACTGTGGG-TTAATTTCAG-TG E_telfairi300316 GA--CTTAAAAAAAG---ACAAGTT--TGGCTTCCATCACTGTAGA-TTAATTTCAG-TG E_telfairi300408 GG--CTGAAAGGATG---ACAGGTT--TTGCTTCCATCACTGTGGG-TTGATTTCAG-TG E_caballus300023 AG--CTATATTGAGA--CACAAGTT--ATGCTTCCATCACAGTAGG-TTTGTTCCAG-TG E_caballus300085 GG--CCATATTGAAA--CACATGTC--ATCCTTCCCTCACAGTACG-TGTATTGCAG-CG E_caballus300149 GG--CTATATTGAGA--CACAGGTT--ATGCTTCCATCACAGTACG-TGTATTACAG-TG E_europaeus300112 GG--CTACATTG--A--TACAGGTT--AAGCTTCCACCACAGCA---TCTATTGCAT-TG A_tauschii300564 ------------------------ A_tauschii300309 ------------------------ A_tauschii300275 ------------------------ A_tauschii300176 ------------------------ A_tauschii300368 ------------------------ A_tauschii300376 ------------------------ A_tauschii300403 ------------------------ A_tauschii300407 ------------------------ A_tauschii300414 ------------------------ A_tauschii300418 ------------------------ A_tauschii300567 ------------------------ O_sativa300059 ------------------------ O_sativa300155 ------------------------ O_sativa300060 ------------------------ P_patens300007 GTGACAATGAGACCTGTAACATCT C_porcellus300183 GTGACGGTGAAACCTGTGACATTT C_porcellus300192 GTGATAATGACACCTGTAACATTT C_porcellus300358 GTAACAATGAAACTTGTAACATTT C_porcellus300486 ATGACAGTAAGACCTGTAACATTT C_porcellus300589 GTGACAATGAGACCTGTAACATTT C_porcellus300622 GTGGACAAGAGACCTGTGACATCT C_porcellus300779 GTGACAATGAGACCTGTAACATCT C_porcellus300800 GTGACAGTGAGACCTGCGACACTT C_porcellus300893 GTGACAGTGAGACATTTTGGCTAA D_rerio300212 ATGACAATGAGGCCTGGAATATTC D_novemcinctus300086 GTGACAATGAGAACTGTAATTTTT D_novemcinctus300185 GTGACGAAGAGATCTGTAACATTT D_novemcinctus300225 GTGACAATGAGACCTGTAACAATT D_novemcinctus300246 GTCACAATAACACCTGTAACTTTC D_novemcinctus300265 GTGACAATGAGATCTGTAACATTT D_novemcinctus300286 GTGACAATGAGACCTATAACATTT D_novemcinctus300306 GTGACAGTGAGACCTGTAATACAT D_novemcinctus300390 GTGACACTGAGACTTGCAACTTTT D_novemcinctus300395 GTGACAATGAGACCTGTAACATTT D_novemcinctus300421 ATGACAATGAGACCTGTAACATTT D_novemcinctus300447 GTGACAATGAGACTTGAAACTTTT D_novemcinctus300455 TTGTCAGTGAGACCTGTAACATTT D_novemcinctus300612 GTGAAAATGACACCTCTAACATAT E_telfairi300049 GTGACAATGAGACCTGTAACACTA E_telfairi300097 GTGACAATGAGACCTGTAACACTT E_telfairi300110 GTGACAATGAGACCTGCAACACTT E_telfairi300112 GTGACAATGAGACCTATAATACTT E_telfairi300233 GTGACAATGAGACCTGTAACACTT E_telfairi300240 GTGACAATGAGACCTGTAACACTT E_telfairi300316 GTGACAATGAGACCTGTAATACTC E_telfairi300408 GTGACAATGAGACCTGTAACACTT E_caballus300023 GTGACAGTGAAACCTGTAACATTT E_caballus300085 GTGACAATGAGACCTGTAACATTT E_caballus300149 GTGACAATGAGACCTGTAACATTA E_europaeus300112 GTGACAATGAGGCCTGCAACATGT