Family: SNORD96

CLUSTAL W (1.83) multiple sequence alignment A_tauschii300005 -TGGCCAGTGATGA-A--AA-ACCTATTAA-TCATACCATCTTTCGGGAC A_tauschii300006 -TGGCTGGTGATGA-A--AA-ACCTTTTAA-TCATACCATCTTTCGGGAC A_tauschii300100 --GGACAATGGTGA-A--AATAACAAACAAAACAAACCATCTTTTGGGAC A_tauschii300181 --GGACAGTGATGA-A--AATCACGAACAAAACACACCATCTTTCGGGAC A_tauschii300101 -TTGTCCATGATGA-A--AA-ACCTGTTAA-TTATACCATCTTTCGGGAC A_tauschii300121 -TGTCCGGTGATGA-A--AA-ACCTGTTGAATCATACCATCTTTCGGGAC A_tauschii300167 -TGTCCGGTGATGA-A--AA-ACCT-TTAA-TCATACCATCTTTCGGGAC A_tauschii300168 --GGACAATGATGA-A--AACCATGAACAAAACACACCATCTTTCGGGAC A_tauschii300180 -TGTCCGGTATTGA-A--AA-ACCTATTCA-TCATACCATCTTTCGGGAC A_tauschii300594 -TGTCCGGTGATGA-A--AA-AGCTGTTAA-TCATACCATCTTTCGGGAC A_tauschii300593 -TGTCCGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC A_tauschii300592 -TGGAAAGTGATCA-A--AAGAAAGAACAAAACACACCATCTTTCGGGAT A_tauschii300589 -TGTCCGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC A_tauschii300588 -TGGAAAGTGATCA-A--AAGAAAGAACAAAACACACCATCTTTCGGGAT A_tauschii300568 -TGTCCGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC A_tauschii300565 -TGTCCGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC A_tauschii300542 -TGGCCAGTGATGA-A--AA-ACCTATTAA-TCATACCATCTTTTGGGAC A_tauschii300509 -TGGTCAGTGATGA-A--AA-ACCTATTAA-TCATACCATCTTTTGGGAC A_tauschii300476 -GTTCCGGTGATGA-A--AA-ACCTGTTAAATCATACCATCTTTCGGGAC A_tauschii300432 --GGACAGTGATGA-A--ATCCACAAACAAAACACACCATCTTTCGGGAC A_tauschii300300 -TGTCTGGTGATGA-A--AA-ACCTATTAA-TCATACCATCTTTAGCGAC A_tauschii300046 -TGGCCGGTGATGA-A--AA-AACTTTTAA-TCATACCATCTTTCGGGAC A_tauschii300057 --GGACAGCGATGA-A--AATCACGAACAAAACACACCATCTTTGGGGAC A_tauschii300099 -TGTCCTGTGACGA-A--AA-ACCTGTT-AATCATACCATCTTTCGGGAC C_familiaris300331 CATCCCAGTGATGACA-GATGACATTGTCAGCCAATCCCT-ACGTGGGA- C_porcellus300898 GATCCTGGTGATGACA-GATGACATTGTCAGCCAATCCC--ACAAGGGA- D_melanogaster300082 -CTTGCTCTGATGACA--AAAACACGAAAAGAACAATCATGTTGAGACAC E_telfairi300705 GATCCTAGTGATGACAG-ACGACATTGTCA-CCTGATCCCCGTGTGGGA- E_caballus300235 GATCCTGGTGATGATA-GACCACATTGTCAGCCAATCCCC-ACGTGGGA- E_europaeus300172 GATCCTGATGATGATAATAAGACATTGTTAACCTGATCCCCACGTGGGG- E_europaeus300563 AATCCTGATGATGATAATAAGACATTGTTAACCTGATCCCCACGTGGGGG G_gorilla300768 GGTCCTGGTGATGACA-GATGGCATTGTCAACCAATCCCC-AAGTGGGA- H_sapiens300555 ---CCTGGTGATGACA-GATGGCATTGTCAGCCAATCCCC-AAGTGGGA- H_sapiens300641 GATCCTGGTGATGACA-GACGACATTGTCAGCCAATCCCC-ATGTGGTA- L_africana300498 -ATCCTGGTGATGACA-GATGACATTGTCAGCTGATCCCC-ATGTGGGA- M_mulatta300695 -ATCCTGGTGATGACA-GATGACATTGTCAGTCAATCCCC-ATGTGGTA- M_mulatta300728 -GTCCTGGTGATGACA-GATGACATTGTCAGCCAATCCCC-ATGTGGGA- M_murinus300443 -GTCCTGGTGATGATG-GACGACATTGTCAGCCAACCCCC-ACGTGGGA- M_musculus300931 GATCCTAGTGATGACAAGACGACATTGTCAACCAATCCCCCACAAGGGA- O_cuniculus300439 GATCCTGGTGATGACA-GATGACATTGTCAGCCAATCCCC-ATGTGGGA- O_garnettii300742 -GTCCTGGTGATGACA-GATGACATTGTCAGCCAACCCCC-ACGTGGGA- P_troglodytes300715 -GTCCTGGTGATGACA-GATGGCATTGTCAACCAATCCCC-AAGTGGGA- P_troglodytes300503 GATCCTGGTGATGACA-GACGACGTTGTCAGCCAATCCCC-ATGTGGTA- P_pygmaeus300756 -GTCCTGGTGATGACA-GATGACATTGTCAGCCAATCCCC-AAGTGGGA- P_pygmaeus300615 GATCCTGGTGATGACA-GACGACGTTGTCAGCCAATCCCC-ATGTGGTA- S_araneus300940 GATCCTGGTGATGATC-AGTGACATGATCAGCCAATCCCC-ATGTGGGA- S_tridecemlineatus300297 GATCCTGGTGATGACA-GATGACATTGTCACCCAATCCCC-ACAAGGAA- S_tridecemlineatus300162 ---TCAATTATTTG-A--GGAAAACAAAA----ATAACATCTTTGGGGAC T_aestivum301239 -TGTCTGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC T_aestivum301240 -TGTCTGGTGATGA-A--AA-ACCTATTAA-TCATACCATCTTTAGCGAC T_aestivum301251 -TGTCCGATGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC T_aestivum301252 -TGTCCGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCAGGAC T_aestivum301254 -TGGCCAGTGATGA-A--AA-ACCTATTAA-TCATACCATCTTTCGGGAC T_aestivum301255 -TGGCTGGTGATGA-A--AA-ACCTTTTAA-TCATACCATCTTTCGGGAC T_aestivum301287 -TGGCCGGTGATGA-A--AA-AACTTTTAA-TCATACCATCTTTCGGGAC T_aestivum301341 --GGACAGTGATGA-A--ATCCACGAACAAAACAC--CATCTTTCGGGAC T_aestivum301350 --GGACAGTGATGA-A--ATCCACGAACAAAACAC--CATCTTTCGGGAC T_aestivum301505 -TGTCCGGTGATGA-A--AA-ACCTATTAA-TCATACCATCTTTCGGGAC T_aestivum301506 --GGACAATGATGA-A--AACCATGAACAAAACACACCATCTTTCGGGAC T_dicoccoides300990 -TGTCCGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC T_dicoccoides300991 --GGACAATGATGA-A--AACCATGAACAAAACACACCATCTTTCGGGAC T_dicoccoides301036 -TGTCCAGTGATGA-A--AA-ACATGTTAA-TCATACCATCTTTCGGGAC T_dicoccoides301037 -TGTCCGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTTGGGAC T_dicoccoides301038 -TGTCCGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC T_dicoccoides301063 -TGGCCAGTGATGA-A--AA-AACTTTTAG-TCATACCATCTTTCGGGAC T_dicoccoides301091 --GGACAGTGATGA-A--ATCCATGAACAAAACACACCATCTTTCGGGAC T_dicoccoides301093 -TGTCCGGTGATGA-A--AA-ACATGTTAA-TCATACCATCTTTCGGGAC T_dicoccoides301100 -TGTCCGGTGATGA-A--AA-ACCTGTTAAATCATACCATCTTTCGGGGC T_dicoccoides301124 -TGGCTGGTGATGA-A--AA-ACCTGTTAA-TCATACCATCTTTCGGGAC T_dicoccoides301125 -TGGCCAGTGATGA-A--AA-ACCTATTAT-TCATACCATCTTTCGGGAC X_tropicalis300118 -------------G-A--GCGAAGTGATGG--TATACCATCTTTCGGGAC * A_tauschii300005 TGATCGGT-TGCTA-TGCGT-CCATGCTGTC--ATTCTGCAATTCTGAGG A_tauschii300006 TGATCGGT-CGCTA-TGCGT-CCATGCTGTC--TTTCTGCAATTCTGAAG A_tauschii300100 TGATTGGTGCGCTT-TGTGTGCCATGCTGTAAAAATCGGCAATTCTGGTG A_tauschii300181 TGATTGGTGCGCTC-GGTGTGCCATGTTGTGAAAGTCTTCAATTCAGATG A_tauschii300101 TGATTTGT-TGCTA-TGCGT-CCATGCTGTC--ATTCCGTAATTCTGAAA A_tauschii300121 TGATTGGT-CGCTA-TGCGT-CCATGCTGTC--ATTCTGCAATTCTGAGG A_tauschii300167 TGATTGGT-CGCCG-TGCGC-CCATGCTGTC--ATTCTGCAATTCTGAGG A_tauschii300168 TGATAGGTGCACTC-TTTGTGCCATGCTGTGAAAATCTGCAATTCTGATG A_tauschii300180 TGATTGGT-TGATG-TGCTC-CCATGCT--C--ATTCTGCAATTCTGAGG A_tauschii300594 TGATTGGT-TGCTA-TG----------TGTC--ATTCTGCAATCCTGAGT A_tauschii300593 TGACTGGT-TGCTA-TG----------TGTC--ATTCTGCAATCGTGAGT A_tauschii300592 TGATTGGTGT-CTCCTATGTGCCATGATGTCTAA-TCTGTAATTCAGACA A_tauschii300589 TGACTGGT-TGCTA-TC----------TGTC--ATTCTACAATCCTGAGT A_tauschii300588 TGATTGTTGTGCTCGTATGTGCCATGATGTCTAA-TCTGCAATTCAGACG A_tauschii300568 TGATTGGT-CGCAG-TGCGC-CCATGCTGTC--ATTCTGCAATTCTGAGG A_tauschii300565 TGATAGGT-CGCAG-TGCGC-CCATGCTGTC--ATTCTGCAATTCTGAGG A_tauschii300542 TGATCGGT-TGCTA-TGTGT-CCATGCTGTC--TTTCTGCAATTCTGAAG A_tauschii300509 TGATCAGT-CGCTA-TGCGC-CCATGCTGTC--ATTCTGCAATTCTGAGG A_tauschii300476 TGATTGGT-CGCTA-TGCGT-CCATGCTGTC--ATTCTGCAATTCTGAGG A_tauschii300432 TGATTGGTGCACTC-TGTG--CCATGCTGTGAAAATGTGTGATTCTGATG A_tauschii300300 TGATTGGT-CGTTG-TGCGC-CCATGCTGTC--ATTCTGCAATTCAGAGG A_tauschii300046 TGATTGGT-CGCTA-TGTGT-CCATGCTGTC--ATTCTGCAATTCTGAGG A_tauschii300057 TGATTGGTGCTCTC-TGTGTGCCATCCTGTGAAAGTCTACAATTCTGATG A_tauschii300099 TGATTGGT-CGCTA-TGCGT-CCATGCTGTC--ATTCTGCAATTCTGAGG C_familiaris300331 GTGAGGACATGTCCTGCAATTCTGAAGGGATA------------------ C_porcellus300898 ATGAGGACATGTCCTGCAATTCTGAGTGGATT------------------ D_melanogaster300082 TATGTGTCCTGCAGTGCTGAGCTT-------------------------- E_telfairi300705 GTGAGGACATGTCCTGCAATTCTGAATGGATT------------------ E_caballus300235 ATGAGGACATGTCCTGCAATTCTGAAGGGATT------------------ E_europaeus300172 TTGAGGACAAGTCCTGCAATTCTGAAAGGGTT------------------ E_europaeus300563 TTGAGGACAAGTCCTGCAATTCTGAAAGGGTT------------------ G_gorilla300768 GTGAGGACATGTCCTGCAATTCTGAAGGGATT------------------ H_sapiens300555 GTGAGGACATGTCCTGCAATTCTGAAGG---------------------- H_sapiens300641 GTGAGGACATGTCCTGCAGTTCTGAAGGGATT------------------ L_africana300498 GTGAGGACATGTCCTGCAATTCTGAGGGAT-------------------- M_mulatta300695 GTGAGGGCATGTCCTGCAGTTCTGAAGAAA-------------------- M_mulatta300728 GTGAGGACATGTCCTGCAATTCTGAAGGGA-------------------- M_murinus300443 GTGAGGACATGTCCTGCAATTCTGAAGGGA-------------------- M_musculus300931 ATGAGGACATGTCCTGCAATTCTGAATGGGTT------------------ O_cuniculus300439 GTGAGGACATGTCCTGCAATTCTGAAGGGATT------------------ O_garnettii300742 GTGAGGACATGTCCTGCAATTCTGAAGGGA-------------------- P_troglodytes300715 GTGAGGACATGTCCTGCAATTCTGAAGGGA-------------------- P_troglodytes300503 GTGAGGACATGTCCTGCAGTTCTGAAGGGATT------------------ P_pygmaeus300756 GTGAGGACATGTCCTGCAATTCTGAAGGGA-------------------- P_pygmaeus300615 GTGAGGACATGTCCTGCAGTTCTGAAGGGATT------------------ S_araneus300940 ATGAGGACATGTCCTGCAATTCTGAAGGGATT------------------ S_tridecemlineatus300297 ATGAGGACATGTCCTGCAATTCTGAGTGGATT------------------ S_tridecemlineatus300162 TGAATAATTTGATG--ATAATAAAGGCAATCTCAATTGA----------- T_aestivum301239 TGATTGGT-CATAG-TGCGC-CCATGCTGTC--ATTCTGCAATTCTGAGG T_aestivum301240 TGATTGGT-CGTTG-TGCGC-CCATGATGTC--ATTCTGCAATTCAGAGG T_aestivum301251 TGATTGGT-CGTAG-TGCGC-CCATGCTGTC--ATTCTGCAATTCTGAGG T_aestivum301252 TGATTGGT-CGTAG-TGCGC-CCATGCTATC--ATTCTGCAATTCTGAGG T_aestivum301254 TGATCGGT-TGCTA-TGCGT-CCATGCTGTC--ATTCTGCAATTCTGAGG T_aestivum301255 TGATCGGT-CGCTA-TGCGT-CCATGCTGTC--TTTCTGCAATTCTGAAG T_aestivum301287 TGATTGGT-CGCTA-TGTGT-CCATGCTGTC--ATTCTGCAATTCTGAGG T_aestivum301341 TGATTGGTGCACTC-TGTGTGCCATGCTGTGAAACTGTGCGATTCAGATG T_aestivum301350 TGATTGGTGCACTC-TGTGTGCCATGCTGTGAAACTGTGCGATTCAGATG T_aestivum301505 TGATTGGT-CGCTG-TGCGC-CCATGCTGTC--ATTCTGCAATTCTGAGG T_aestivum301506 TGATAGGTGCACTC-TGTGTGCCATGCTGTGAAAATCTGCAATTCTGATG T_dicoccoides300990 TGATTGGT-CGCTG-TGCGT-CCATGCTGTC--ATTCTGCAATTCTGAGG T_dicoccoides300991 TGATAGGTGCACTC-TGTGTGCCATGCTGTGAAAATCTGCAATTCTGATG T_dicoccoides301036 GGATTGGT-CGTAG-TGCGC-CCATGCTGTC--ATTCTGCAATTCTAAGG T_dicoccoides301037 TGATTGGT-CACAG-TGTGC-CCATGCTGTC--ATTCGGCAATTCTGAGG T_dicoccoides301038 TGATTGGT-CACAG-TGTGC-CCATGCTGTC--ATTCGGCAGTTCTGAGG T_dicoccoides301063 TGATTGGG-CGCTA-TGCGT-CCATGCTGTC--ATTCTGCAATTCTGAGG T_dicoccoides301091 TGATTGGTGCACTC-TGTGTGCCATGCTGTGAAAATGTGCGATTCTGATG T_dicoccoides301093 TGATCGGT-CGCTA-TGCGT-CCATGCTGCC--ATTCCGTAATTCTGAGG T_dicoccoides301100 TGATCGGT-CGCTA-TGCGT-CCATGCTGCC--ATTCCGTAATTCTGAGG T_dicoccoides301124 TGATAGGT-CGCTA-TGCGT-CCATGCTGTC--TTCCTGCAATTCTGAAG T_dicoccoides301125 TGATTGGT-CGCTA-AGCGC-CCATGCTGTC--ATTCTGCAATTCTGAGG X_tropicalis300118 TGAATCCCCTGATG--ACATCTTAATAAAACT-GATCGCTC--------- A_tauschii300005 TCA A_tauschii300006 CCA A_tauschii300100 TCC A_tauschii300181 CCC A_tauschii300101 CAG A_tauschii300121 ACA A_tauschii300167 ACA A_tauschii300168 TTC A_tauschii300180 CCA A_tauschii300594 ACA A_tauschii300593 ACA A_tauschii300592 CCA A_tauschii300589 ACA A_tauschii300588 CCA A_tauschii300568 ACA A_tauschii300565 ACA A_tauschii300542 CCA A_tauschii300509 TCA A_tauschii300476 ACA A_tauschii300432 TCC A_tauschii300300 ACA A_tauschii300046 CCA A_tauschii300057 TCC A_tauschii300099 ACA C_familiaris300331 --- C_porcellus300898 --- D_melanogaster300082 --- E_telfairi300705 --- E_caballus300235 --- E_europaeus300172 --- E_europaeus300563 --- G_gorilla300768 --- H_sapiens300555 --- H_sapiens300641 --- L_africana300498 --- M_mulatta300695 --- M_mulatta300728 --- M_murinus300443 --- M_musculus300931 --- O_cuniculus300439 --- O_garnettii300742 --- P_troglodytes300715 --- P_troglodytes300503 --- P_pygmaeus300756 --- P_pygmaeus300615 --- S_araneus300940 --- S_tridecemlineatus300297 --- S_tridecemlineatus300162 --- T_aestivum301239 ACA T_aestivum301240 ACA T_aestivum301251 ACA T_aestivum301252 ACA T_aestivum301254 TCA T_aestivum301255 CCA T_aestivum301287 CCA T_aestivum301341 TCC T_aestivum301350 TCC T_aestivum301505 ACA T_aestivum301506 TCC T_dicoccoides300990 ACA T_dicoccoides300991 TCC T_dicoccoides301036 ACA T_dicoccoides301037 AAA T_dicoccoides301038 AAA T_dicoccoides301063 CCA T_dicoccoides301091 TCC T_dicoccoides301093 ACA T_dicoccoides301100 ACA T_dicoccoides301124 CCA T_dicoccoides301125 TCA X_tropicalis300118 ---