Family: SNORD41

CLUSTAL W (1.83) multiple sequence alignment C_elegans300017 -------------------------------------------------- C_familiaris300414 -------------------------------------------------- C_porcellus300883 -------------------------------------------------- E_telfairi300724 -------------------------------------------------- E_caballus300301 -------------------------------------------------- E_europaeus300195 -------------------------------------------------- E_europaeus300196 -------------------------------------------------- E_europaeus300636 -------------------------------------------------- F_catus300321 -------------------------------------------------- G_gorilla300125 -------------------------------------------------- G_gorilla300323 -------------------------------------------------- H_sapiens300559 -------------------------------------------------- M_mulatta300218 -------------------------------------------------- M_mulatta300538 -------------------------------------------------- M_murinus300573 -------------------------------------------------- M_musculus300808 -------------------------------------------------- M_lucifugus300374 -------------------------------------------------- M_lucifugus300778 -------------------------------------------------- O_garnettii300617 -------------------------------------------------- P_troglodytes300044 -------------------------------------------------- P_troglodytes300602 -------------------------------------------------- P_pygmaeus300558 -------------------------------------------------- P_pygmaeus300658 -------------------------------------------------- R_norvegicus300978 -------------------------------------------------- S_araneus300968 -------------------------------------------------- T_belangeri300324 -------------------------------------------------- H_sapiens300625 TTGCATTCTTA--AACCCTCTTGGTGGCTTCCCTGTAAATGCTTCCAAGA H_sapiens300679 CTGCATTCTTA--AACCCTCTTGGTAGCTTCGTTCTAAGTGCTTCCAAGA M_mulatta300592 CTGCATTCTTA--AACCCTCTTGGTAGCTTCGTTCTAAGTGCTCCCAAGA M_mulatta300704 TTGCATTCTTA--AACCCTCTTGGTGGCTTTCCTCTAAATGCTTCCAAGA M_murinus300058 --------TTG--CATGCATTAG--AGCTTTGTTCTAAATGCTTCCAAGA M_murinus300508 TTGCATTCTTA--AACCCTCTTGGTTGCTTCGCTCTAAACGCTTCCAAGA M_domestica300079 CCGCATTCTTA--AACCCTCTTGGTAGCCTTGC--TCTAAGCTTCCAAGA M_musculus300817 TTGCATTCTTA--AACCCTCTTGGCAGCTTTGCT-CTGGTGCTTCCAAGA M_lucifugus300740 TTGCATTCTTA--AACCCTCTTGGTGGCTGCTC--TCGGTGCCTCCAGGA O_anatinus303370 CCGCGGGCTTC--GACCCTCTCGGTAGCGTCGC--CGGGAGCTTCGGAGA O_anatinus304533 CTGCATTCTTA--AACCCTCTTGGTAGCGTCGC--CAGAAGCTGCCAAGA O_cuniculus300428 TTGCATTCCTA--AACCTTCTTGGTAGCTTCGCTGAAAACGCTTCCAAGA O_garnettii300129 ATGCATTCTTA--AATTTCCTTGGTAGCTTTAC--TCTGTGCTTCCATGA P_troglodytes300156 TTGCATTCTTA--AACCCTCTTGGTGGCTTCCCTGTAAATGCTTCCAAGA P_troglodytes300537 CTGCATTCTTA--AACCCTCTTGGTAGCTTCGTTCTAAGTGCTTCCAAGA P_pygmaeus300075 TTGCATTCTTA--AACCCTCTTGGTGGCTTCCCTCTAAATGCTTCCAAGA P_pygmaeus300582 CTGCATTCTTA--AACCCTCTTGGTAGCTTCGTTCTAAGTGCTTCCAAGA R_norvegicus300984 TTGCATTCTTA--AACCCTCTTGGCGGCTTTGCT-CTGGTGCTTCCAAGA S_araneus301074 GCGCATTCTTA--AACCCTCTTGGCGGC-GCTC--CGATCGCCCCCAGGA S_tridecemlineatus300174 TTGCATTCTTA--AACCCTCTTGGCGGCTTCGC--CTAGTGCTTCCAAGA T_nigroviridis300106 CAGCATCCTTACAAAACCCCCCAGCTGCTGCTC----GTGGCTGCTGGGA C_elegans300017 -CTGCGGTGACGATCAAC-TCTTACCTACTATGACAAAAACAATGGTTAG C_familiaris300414 TGGGAAGTGATGACACT-----CATGACCCTTGA-CATCCTGCTGATTTC C_porcellus300883 TGAGAAGTGATGACATAC-TTATGTGACTGCTGA-CATG-CCCTGATTTC E_telfairi300724 TGGGAAATGATGTTAC------CTTGACCCTTGA-CATCACGCTGATTTT E_caballus300301 CGGGAAGTGATGATATG-----CATGACCCCTGA-CATCAAGCTGATTTC E_europaeus300195 CGGGAGGTGATGACACT-----CTGAACGCTTGATCACCGCAATGATTTC E_europaeus300196 CCCCCAGTGATGACAGT-----CCTGACGCTTGACCAC-GCAATGATTTC E_europaeus300636 CGGGAGGTGATGACACT-----CTGAACGCTTGATCACCGCAATGATTTC F_catus300321 TGGGAAGTGATGATACT-----CCCGACCCTTGA-CGTCACGCTGATCTC G_gorilla300125 AGGGAAGTGATGACAAC-----TGTGACTGTTG--TGTGACACTGATTTC G_gorilla300323 TGGGAAGTGATGACACC-----TGTGACTGTTGA-TGTGGAACTGATTTA H_sapiens300559 TGGGAAGTGATGACACC-----TGTGACTGTTGA-TGTGGAACTGATTTA M_mulatta300218 AGGGAAGTGATGACACC-----TTTGACTGTTG--TGTGACACTGATTTC M_mulatta300538 TGGGAAGTGATGACACC-----TGTGACTGTTGA-TGTGTCACTGATTTC M_murinus300573 TGGGAAGTGATGACACC-----CGTGACTGCTGA-TGTGGCACTGATTTC M_musculus300808 TGGGAAATGATGATGCC-----TGTGACTGCTGA-CAAGACTCTGATGTC M_lucifugus300374 AGGGAAGTGATGACACT-----CATTACCTCTGA-TATTC-GCTGATTTC M_lucifugus300778 CGGGAAGTGATGACACT-----CATTACCTCTGA-TATTC-GCTGATTTC O_garnettii300617 TGGGAAGTGATGACACC-----TGTGACTGCTGA-TG-GGCACTGATTTC P_troglodytes300044 AGGGAAGTGATGACAAC-----TGTGACTGTTG--TGTGACACTGATTTC P_troglodytes300602 TGGGAAGTGATGACACC-----TGTGACTGTTGA-TGTGGAACTGATTTA P_pygmaeus300558 GGGGAAGTGATGACAAC-----TGTGACTGTTG--TGTGACACTGATTTC P_pygmaeus300658 TGGGAAGTGATGACACC-----TGTGACTGTTGA-TGTGGAACTGATTTA R_norvegicus300978 TGGGAAATGATGATGCC-----TATGACTGCTGA-CAAGACTCTGATCAC S_araneus300968 TCTGAAGTGATGACACT----GTGTGA-GCCTGA-CCTCGCACTGATTCC T_belangeri300324 GGGGAAGTGATGACACT------GTGACCGCTGA-CGTGGCACTGATTTC H_sapiens300625 TATGAGCGAATGCTATAG-AAATTGCAGGAAAGTCCAAAGGGCTGCGCGT H_sapiens300679 TATGAGTGAATGCTATAG-AAATTGCAGGGGAGTCCAAAGGGCTGCGCTT M_mulatta300592 TATGAGTGAATGCTATAG-AAATTGCAGGGGAGTCCAAAGGGCTGCGCTT M_mulatta300704 TATGAGCGAATGCTATAG-AAATTGCAGGGAAGTCCAAAGGGCTGCGCTT M_murinus300058 AATGAGTGAATGCTATAG-AAATTGCAGAGGAGTCCAAAGGGCTGCGCTT M_murinus300508 TACGAGTGAATGCTATAG-AAATTGCAGGGGAGTCCAAAGGGCTGCGCTT M_domestica300079 TATGAGTGAATGCCACAGAAAATTGCAGATGAATCCAAAATGCTAGGTAT M_musculus300817 TATGAGTGAATGCTAGAC-AAAGTGCGGGGGAGTCCAAAGGGCTGCGCTC M_lucifugus300740 TATGAGTGGATGCGACAG-GAACCGCAGG--AGTCCAAAGGGCTGCGCC- O_anatinus303370 TGCGAGCGAACGCGGCGGGAGACTGCGGGGCGATCCGGGGCGCCGGGCCC O_anatinus304533 TACGAGTGAATGCGACAGGAAACTGCAGATCAATCCAGAATGCCGGGCTT O_cuniculus300428 TATCAGTGAATGCTATAG-AAATCGCAGGGGAGTCCAAAAGGCTGCCCTT O_garnettii300129 TATGAGTGAATGC-ATAG-AAATTGCAGAGGAATCCAAAGGACTGTGCTT P_troglodytes300156 TATGAGCGAATGCTATAG-AAATTGCAGGAAAGTCCAAAGGGCTGCGTGT P_troglodytes300537 TATGAGTGAATGCTATAG-AAATTGCAAGGGAGTCCAAAGGGCTGCGCTT P_pygmaeus300075 TATGAGCGAATGCTATAG-AAATTGCAGGGAAGTCCAAAGGGCTGCACGT P_pygmaeus300582 TATGAGTGAATGCTATAG-AAATTGCAGGGGAGTCCAAAGGGCTGCGCTT R_norvegicus300984 TATGAGTGAATGCTAGAC-AAAGTGCGGGGGAGTCCAAAGGGCTGTGCTC S_araneus301074 TATGAGTGAATGCGATAG-AAACCGCAGGGGAGTCCAAAGGGCTGCGCCC S_tridecemlineatus300174 TATGAGTGAATGCTAGAG-AAATTGCGGGGGAGTCCAAAGGGCTGCGCCT T_nigroviridis300106 CAAGAAAGGATGCGAGAT-GAACGTTAGAACCATCCAAAACTGAGGGCTG * * C_elegans300017 A-CGTT-----ACTCGTACTGTCTGAGCAG-------------------- C_familiaris300414 --TGAC---GTATTCGTACTGG-CTGAT----CCCA-------------- C_porcellus300883 --T-CT---GTATTCGTACTGG-CTGAT----CCCA-------------- E_telfairi300724 --TCTT---GTATTCGTACTGA-CTGAT----CCCG-------------- E_caballus300301 --TCGC---GTATTCGTACTGG-CTGAT----CCCA-------------- E_europaeus300195 --TCACTGAGTATTCGTACTGG-CTGAT----CCCG-------------- E_europaeus300196 --TGGC---GTATTCGTACTGA-CTGAC----CCGGGGG----------- E_europaeus300636 --TCACTGAGTATTCGTACTGG-CTGAT----CCCG-------------- F_catus300321 --TCGC---GTATTCGTACTGG-CTGAT----CCCG-------------- G_gorilla300125 --TCTC---ATATTTGTACTGG-CTGAT----CCTG-------------- G_gorilla300323 --TCGC---GTATTCGTACTGG-CTGAT----CCTG-------------- H_sapiens300559 --TCGC---GTATTCGTACTGG-CTGAT----CCTG-------------- M_mulatta300218 --TCTC---GTATTCGTACTGG-CTGAT----CCTG-------------- M_mulatta300538 --TCTC---GTATTCGTACTGG-CTGAT----CCTG-------------- M_murinus300573 --TCTC---GTATTCGTACTGG-CTGAT----CCCG-------------- M_musculus300808 --TGTT---GTATTCGTACTGG-CTGAT----CCTG-------------- M_lucifugus300374 --TAAC---GTATTCGTACTGG-CTGAT----CCCG-------------- M_lucifugus300778 --TAAC---GTATTCGTACTGG-CTGAT----CCCG-------------- O_garnettii300617 --TTGA---GTATTCGTACTGG-CTGAT----CCTG-------------- P_troglodytes300044 --TCTC---ATATTTGTACTGG-CTGAT----CCTG-------------- P_troglodytes300602 --TCGC---GTATTCGTACTGG-CTGAT----CCTG-------------- P_pygmaeus300558 --TCTC---ATATTCGTACTGG-CTGAT----CCTG-------------- P_pygmaeus300658 --TCTT---GTATTCGTACTGG-CTGAT----CCTG-------------- R_norvegicus300978 --TGTC---GTATTCGTACTGG-CTGAT----CCTG-------------- S_araneus300968 --TCTT---GTATTGGTACTGG-CTGAT----CGGA-------------- T_belangeri300324 --TCTG---GTATTCGTACTGGGCTGAT----CCCGCGGTGAGGCGGATT H_sapiens300625 --CTCCTGTGG-CTCAGTCTTATTTCAT---ACCTGCAACATCT------ H_sapiens300679 --CTCCCGTGG-CTCAGTCTTATTTCAT---ACCTGCGACATCT------ M_mulatta300592 --CTCCCGTGG-CTCAGTCTTATTTCAT---ACCTGCGACATCT------ M_mulatta300704 --CTCCTGTGG-CTCAGTCTTATTTCAT---ACCTGCGACATCT------ M_murinus300058 --CCCCTGTGG-CTCAGTCTTATTTCAT---ACCTGTGACATCT------ M_murinus300508 --CTTCTGTGG-CTCAGTCTTATTTCAT---ACCTGCGACATCT------ M_domestica300079 T-TTCCTCTGA-CTTGGCATTATTTCA---GATCTGTGACAACT------ M_musculus300817 --CTCACGTGG-CTCAGTCTTATTTCAT---ACCTGCGACATCT------ M_lucifugus300740 --TCCCGGTGG-CTCAGCCTTATTTCAG---ACCTGCGACATCT------ O_anatinus303370 ATCTCCTGGGG-CCCGGCGTTCTTTCACTAAAACTGAAACGGCTC----- O_anatinus304533 GGCTTCTGTGG-CCTGGCATTCTTTCACT-AATCTGAAACAGCT------ O_cuniculus300428 --CTCCTGTGG-ATCAGTCTTATTTCAT---ACCTGCGACATAT------ O_garnettii300129 --CACCTATGG-CTCAGTGTTATTTTAT---ACCTGTGACATCA------ P_troglodytes300156 --CTCCTGTGG-CTCAGTCTTATTTCAT---ACCTGCAACATCT------ P_troglodytes300537 --CTCCCGTGG-CTCAGTCTTATTTCAT---ACCTGCGACATCT------ P_pygmaeus300075 --CTCCTGTGGACTCAGTCTTATTTCAT---ACCTGCGACATCT------ P_pygmaeus300582 --CTCCCGTGG-CTGAGTCTTATTTCAT---ACCTGCGACATCT------ R_norvegicus300984 --CTCACGTGG-CTCAGTCTTATTTCAT---ACCTGCGACATCT------ S_araneus301074 CCTCCCCGTGG-CGCGGCCTTATTTCAT---ACCTGCGACATCA------ S_tridecemlineatus300174 --CTCTCGTGG-CTCAGCCTCATTTCAT---ACCTGCGACATCT------ T_nigroviridis300106 TGTGTCCGTAG-CTCTGAGTTATTTCAC---CTCTAAGACAGAA------ * C_elegans300017 -------------------------------------------------- C_familiaris300414 -------------------------------------------------- C_porcellus300883 -------------------------------------------------- E_telfairi300724 -------------------------------------------------- E_caballus300301 -------------------------------------------------- E_europaeus300195 -------------------------------------------------- E_europaeus300196 -------------------------------------------------- E_europaeus300636 -------------------------------------------------- F_catus300321 -------------------------------------------------- G_gorilla300125 -------------------------------------------------- G_gorilla300323 -------------------------------------------------- H_sapiens300559 -------------------------------------------------- M_mulatta300218 -------------------------------------------------- M_mulatta300538 -------------------------------------------------- M_murinus300573 -------------------------------------------------- M_musculus300808 -------------------------------------------------- M_lucifugus300374 -------------------------------------------------- M_lucifugus300778 -------------------------------------------------- O_garnettii300617 -------------------------------------------------- P_troglodytes300044 -------------------------------------------------- P_troglodytes300602 -------------------------------------------------- P_pygmaeus300558 -------------------------------------------------- P_pygmaeus300658 -------------------------------------------------- R_norvegicus300978 -------------------------------------------------- S_araneus300968 -------------------------------------------------- T_belangeri300324 CGTCCGCCGTTGATCGATTCATGTTGTTACACACGCTGAAGCTTCAAGAT H_sapiens300625 -------------------------------------------------- H_sapiens300679 -------------------------------------------------- M_mulatta300592 -------------------------------------------------- M_mulatta300704 -------------------------------------------------- M_murinus300058 -------------------------------------------------- M_murinus300508 -------------------------------------------------- M_domestica300079 -------------------------------------------------- M_musculus300817 -------------------------------------------------- M_lucifugus300740 -------------------------------------------------- O_anatinus303370 -------------------------------------------------- O_anatinus304533 -------------------------------------------------- O_cuniculus300428 -------------------------------------------------- O_garnettii300129 -------------------------------------------------- P_troglodytes300156 -------------------------------------------------- P_troglodytes300537 -------------------------------------------------- P_pygmaeus300075 -------------------------------------------------- P_pygmaeus300582 -------------------------------------------------- R_norvegicus300984 -------------------------------------------------- S_araneus301074 -------------------------------------------------- S_tridecemlineatus300174 -------------------------------------------------- T_nigroviridis300106 -------------------------------------------------- C_elegans300017 -------------------------------------------------- C_familiaris300414 -------------------------------------------------- C_porcellus300883 -------------------------------------------------- E_telfairi300724 -------------------------------------------------- E_caballus300301 -------------------------------------------------- E_europaeus300195 -------------------------------------------------- E_europaeus300196 -------------------------------------------------- E_europaeus300636 -------------------------------------------------- F_catus300321 -------------------------------------------------- G_gorilla300125 -------------------------------------------------- G_gorilla300323 -------------------------------------------------- H_sapiens300559 -------------------------------------------------- M_mulatta300218 -------------------------------------------------- M_mulatta300538 -------------------------------------------------- M_murinus300573 -------------------------------------------------- M_musculus300808 -------------------------------------------------- M_lucifugus300374 -------------------------------------------------- M_lucifugus300778 -------------------------------------------------- O_garnettii300617 -------------------------------------------------- P_troglodytes300044 -------------------------------------------------- P_troglodytes300602 -------------------------------------------------- P_pygmaeus300558 -------------------------------------------------- P_pygmaeus300658 -------------------------------------------------- R_norvegicus300978 -------------------------------------------------- S_araneus300968 -------------------------------------------------- T_belangeri300324 ATGAGTAAATTCCACAGGAAAAGGAAGGCAGTCCAAAGGGCTGTGCTTCT H_sapiens300625 -------------------------------------------------- H_sapiens300679 -------------------------------------------------- M_mulatta300592 -------------------------------------------------- M_mulatta300704 -------------------------------------------------- M_murinus300058 -------------------------------------------------- M_murinus300508 -------------------------------------------------- M_domestica300079 -------------------------------------------------- M_musculus300817 -------------------------------------------------- M_lucifugus300740 -------------------------------------------------- O_anatinus303370 -------------------------------------------------- O_anatinus304533 -------------------------------------------------- O_cuniculus300428 -------------------------------------------------- O_garnettii300129 -------------------------------------------------- P_troglodytes300156 -------------------------------------------------- P_troglodytes300537 -------------------------------------------------- P_pygmaeus300075 -------------------------------------------------- P_pygmaeus300582 -------------------------------------------------- R_norvegicus300984 -------------------------------------------------- S_araneus301074 -------------------------------------------------- S_tridecemlineatus300174 -------------------------------------------------- T_nigroviridis300106 -------------------------------------------------- C_elegans300017 ----------------------------------- C_familiaris300414 ----------------------------------- C_porcellus300883 ----------------------------------- E_telfairi300724 ----------------------------------- E_caballus300301 ----------------------------------- E_europaeus300195 ----------------------------------- E_europaeus300196 ----------------------------------- E_europaeus300636 ----------------------------------- F_catus300321 ----------------------------------- G_gorilla300125 ----------------------------------- G_gorilla300323 ----------------------------------- H_sapiens300559 ----------------------------------- M_mulatta300218 ----------------------------------- M_mulatta300538 ----------------------------------- M_murinus300573 ----------------------------------- M_musculus300808 ----------------------------------- M_lucifugus300374 ----------------------------------- M_lucifugus300778 ----------------------------------- O_garnettii300617 ----------------------------------- P_troglodytes300044 ----------------------------------- P_troglodytes300602 ----------------------------------- P_pygmaeus300558 ----------------------------------- P_pygmaeus300658 ----------------------------------- R_norvegicus300978 ----------------------------------- S_araneus300968 ----------------------------------- T_belangeri300324 CCTGTGGCTCAGTATCATTCGTAGCTGTGACATCT H_sapiens300625 ----------------------------------- H_sapiens300679 ----------------------------------- M_mulatta300592 ----------------------------------- M_mulatta300704 ----------------------------------- M_murinus300058 ----------------------------------- M_murinus300508 ----------------------------------- M_domestica300079 ----------------------------------- M_musculus300817 ----------------------------------- M_lucifugus300740 ----------------------------------- O_anatinus303370 ----------------------------------- O_anatinus304533 ----------------------------------- O_cuniculus300428 ----------------------------------- O_garnettii300129 ----------------------------------- P_troglodytes300156 ----------------------------------- P_troglodytes300537 ----------------------------------- P_pygmaeus300075 ----------------------------------- P_pygmaeus300582 ----------------------------------- R_norvegicus300984 ----------------------------------- S_araneus301074 ----------------------------------- S_tridecemlineatus300174 ----------------------------------- T_nigroviridis300106 -----------------------------------