Family: SNORA56

CLUSTAL W (1.83) multiple sequence alignment C_familiaris300089 --------------CAGCA-AGTAGCTATTTCCTTCTGGTCTGGCTTGTGGGAATCTAG- C_familiaris300311 --------------CAGCA-GACAGTTGCCCTTTTCTAGTCTGGCTCGAGGGACTCTAG- D_rerio300285 --------------CTGCA-GACTGTTATCCCTTTTTGTTCTG----CTGTGAGCCTAG- D_novemcinctus300515 --------------TAGCA-GACAGTTATCCCTTTCTAGTCTGGCTCACGGGACTCTAG- D_melanogaster300136 -TCAGTCCACCTCAATGCCAGATGGCTTAAAAATACGATGCCATACTGAGCATAACCAA- D_melanogaster300138 -TCAGTCCACCTCAATGCCAGATGGCTTAAAAATACGATGCCATACTGAGCATAACCAA- D_melanogaster300140 -TGAGTCTACCTCAATGCTAGTTGA--AGGAAATTC-CATCCCAGCTAAGGCATATATT- D_melanogaster300141 -GGAGTCCTCCTCAATGCCAGTTGA--TGGTAATTTTCAGCCGAACTGAGCATAACTCT- D_melanogaster300142 TCTAGTCCTCCTCAATGCTGGCTATGTTCTACATAC-----TTTCCGAAGCATAACTCTC D_melanogaster300143 -----CCGCGTCCCATGCTAAACTGTGGCCAGAGAACGTTGCCACTCGGTCATGGGTAG- E_caballus300276 --------------CAGCA-GACAGTTATCCCTTTCTAGTCTGGGTCATGGGACTCTAG- G_gorilla300499 --------------CGGCA-GACAGTTATCCCTTTCTAGTCTGGCTCGTGGGACTCTAG- H_sapiens300647 --------------CGGCA-GACAGTTATCCCTTTCTAGTCTGGCTCGTGGGACTCTAG- L_africana300444 --------------GTGCA-GACAGTTACCCCTTTCTAGTCTGGCTCCTGGGACTCTAG- M_mulatta300700 --------------CGGCA-GACAGTTACCCCTTTCTAGTCTGGCTCGTGGGACTCTAG- M_murinus300499 --------------CTGCACAGCAGTTATCCCTTTCTAGCCTGGCTCCTGGGACTCTAG- M_domestica300039 --------------AAGCA-GACAGTTATCCCTTTCTGGTCTTCCTCTCGTGACCTTAG- M_lucifugus300433 --------------CAGAA-GATAGGTGTCCCTTTCTAATCTGGCTTGTGGGACTCTAG- M_lucifugus300742 --------------CAGCA-GACAGTTATCCCTTTCTAGTCTGGCATGTGGGACTTTAG- O_anatinus303566 --------------AGGCA-GATGGTTATCCCTCTCTAGTCTGA-TCCAGTGTCTCTAG- O_anatinus304360 ------------------T-CTCAGTTACCTCTCTCTGGTCTGA-TCCGGTGACTCTAG- O_anatinus304499 --------------AGGCA-GATGGTTATCCCTCTCTAGTCTGA-TCCAGTGTCTCTAG- O_anatinus304500 --------------AAGCA-GGCGGTTATCCCTCTCTAGCTTGA-TCGGGTGGCTCTAG- P_troglodytes300507 --------------CGGCA-GACAGTTATCCCTTTCTAGTCTGGCTCGTGGGACTCTAG- P_pygmaeus300620 --------------CGGCA-GACAGTTATCCCTTTCTAGTCTGGCTCGTGGGACTGTAG- S_araneus300979 --------------CCGCA-GATGGTTATCCCTTTCTTGTCTGGCATGGGGGACTCTAG- T_belangeri300420 ------------------T-GGCAGTTATCCTTTTCTAGTCTGGCTCCTGGGACTCTAG- C_familiaris300089 AGGGTGTCCGTC-GCCACCATAAGTGG-TGAGTTCT------GCCCAGCGCCA--GTGTT C_familiaris300311 AGGGAGTCCGTCTGCGACAGTAAGTGG-TGAGCTCGT-----GTCTGTCATCA--GTATT D_rerio300285 AGGGAGTCTGTCTGCTAAAGCAAAACCCTGAGCTCAGGCTAATGCTGTCTGCACGATGTG D_novemcinctus300515 AGGGAGTCAGTCTGCAACATTAAGTGG-TGAGTTTTTCT---GTCCAGCGTCA--GTATT D_melanogaster300136 AAATGGACTAATATCAATTGAAATTGTTTTAACTATCCTTGTGCCTGAAGATA--TAAGC D_melanogaster300138 AAATGGACTAATATCAATTGAAATTGTTTTAACTATCCTTGTGCTTGAAGATA--TAAGC D_melanogaster300140 AAATAGACTCAGAG-----GAATAAGTGTTAATTATCCTAGTGCTTGAAGAT---TAAGC D_melanogaster300141 TAATGGACTCATAG-----GAAAAGGTATTAACTATCCTTGTGCTTGAAGAT---AAAAC D_melanogaster300142 AAAGGGACTAATAGTGA--ACCAAAGATTTAATTATCCTAGTGCTAGAATAG---AAAGC D_melanogaster300143 -AATGGGCACGCAGAGCGAACACAAGGTTTTAATGTCCTAGTGCTTGAAGATATCAAAGC E_caballus300276 AGGGAGTCAGTCTGCAACAGCAAGTGG-TGAGTTCTTCTTCTGTCCAGCGTCA--GTATT G_gorilla300499 AGGGAGTCAGTCTGCAACAGTAAGTGG-TGAGTTCTTCT---GTCCAGCGTCA--GTATT H_sapiens300647 AGGGAGTCAGTCTGCAACAGTAAGTGG-TGAGTTCTTCT---GTCCAGCGTCA--GTATT L_africana300444 AGGGAGTCAGTCTGAAATATTAAGTAG-TGAACTCGTCT---GTCCAGTGTCA--GTGTT M_mulatta300700 AGGGAGTCAGTCTGCAACAGTAAGTGG-TGAGTTCTTCT---GTCCAGCGTCA--GTATT M_murinus300499 AGGGAGTCAGTCTGCAACAGTAAGTGG-TGAGTTCT------GTCCAGCATCA--ATATT M_domestica300039 AGGGAGTCAGTCTGCAACATGAAGTGATGGCAAGCTGTTTCTGGCCAGCATCACAGTGTG M_lucifugus300433 AGGGAGTCAATCTGCAGCAGTAAATGC-TGAGTTCCTCT---GACTAGTGTCA--GCATT M_lucifugus300742 AGGGAGTCAGTCTGCAACAGTAAGTGG-TGAGTTGCTTT---GTCCAGCGTCA--GTATT O_anatinus303566 AGGGAGTCAGTCTGCAAAATCAACTG--GGGGCCCTGTTTCCGTCCAGCATCATGGTTCT O_anatinus304360 AGGAAGTCGGCCTGCAAAATCAAATGC-AAGGCCCCGTTTCTGACCACCATCACAGTG-- O_anatinus304499 AGGGAGTCAGTCTGCAAAATCAACTG--GGGGCCCTGTTTCCGTCCAGCATCATGGTTCT O_anatinus304500 AGGGAGTCAGTCTGCAAAATCAAATGG-AAGGCCCTGTTTCTGTCCAGCACCACAGTGCT P_troglodytes300507 AGGGAGTCAGTCTGCAACAGTAAGTGG-TGAGTTCTTCT---GTCAAGCGTCA--GTATT P_pygmaeus300620 AGGGAGTCAGTCTGTAACAGTAAGTGG-TGAGTT---CT---GTCCAGCGTCA--GTATT S_araneus300979 AGGGAGTCAATCTGCAAAAACAAGTGG-TAAGTTCTGCTTCTGCCTAGCTT----GTGC- T_belangeri300420 AAGGAGTCAGTCTGCAACAATAAGTGG-TGAGTTCTTCT---GTCCAGTGTCA--GTGTT * * C_familiaris300089 TTAGAGGAGCCT--TGAGATTTGACACATTTCA-- C_familiaris300311 TTGACGATGGCC--GTAGACTTGCCAGATAGCG-- D_rerio300285 TGCACGATGGACACCTGAGCTCTGTGGACATCT-- D_novemcinctus300515 TTGATGGTGGCT--TTAGACTTACCAGATATCA-- D_melanogaster300136 CACTTCCTGCTCTCCTGGAAATTAAAACAACACTA D_melanogaster300138 CACTTCCTGCTCTCCTGGAAATTAAAACAACACTA D_melanogaster300140 CACTTCCCGCTCTCCTGGAATTTAAGACTACATTA D_melanogaster300141 CACTTCCCGCTCTCCTGGAACTTAATTCGACATTT D_melanogaster300142 AAATTCTGGTTCTCCTGGAACTTAAAGCTACAATA D_melanogaster300143 CTCTTCTTGTTCTCCGGGAACTTAAAACCACATTA E_caballus300276 TTGATGGTGGCT--TTAGACTTGCCGGATAGCA-- G_gorilla300499 TTGATGGTGGCT--TTAGACTTGCCAGATAACA-- H_sapiens300647 TTGATGGTGGCT--TTAGACTTGCCAGATAACA-- L_africana300444 C-ATTGGCAACT--TTAGACTTGCCAAGTATCA-- M_mulatta300700 TTGATGGTGGTT--TGAGACTTGCCAGATAACA-- M_murinus300499 TTGTTTTATTTT--TTTTATTTATTTTTTTTTT-- M_domestica300039 TTGATGGTGGTT--TCAGCCTTGCCAGACACCC-- M_lucifugus300433 TTGATGTTGGCT--TTAGATTTCCCAGATATCA-- M_lucifugus300742 TTGATGGTGGCT--TTAGACTTGCCAGATAACT-- O_anatinus303566 TTGATGATGGTT--TCAGACCTGCCATACATTC-- O_anatinus304360 ---GCGGTGGTT--CCAGATTTGCCACACGCCA-- O_anatinus304499 TTGATGATGGTT--TCAGACCTGCCATACATTC-- O_anatinus304500 TTGGTGGTGGTT--GCAGACCTGCCATATATGG-- P_troglodytes300507 TTGATGGTGGCT--TTAGACTTGCCAGATAACA-- P_pygmaeus300620 TTGATGGTGGCT--TTAGACTTGCCAGATAACA-- S_araneus300979 CTATTGGTGGCT--TTAGACTTGCCAAACATGG-- T_belangeri300420 T-GATGGTGGCT--GTAGACCTGCCAGATATCA-- GATCGCATGGT-CAAAGAACATCTAAGGGACT A_thaliana300032 TGATT-----GCGGTAATGATCGCATTATT--ATGAACATCTAAGGGACT A_thaliana300033 TGATT-----GCGGTAATGATCGCATTATT--ATGAACATCTAAGGGACT C_elegans300120 CTATTAGTTCACTGAGGAAAATAGCAATCATGAGCCT------------- C_familiaris300100 TGATCT--CCGTGAGGATAAAAAAAACTCTGAGGAG-------------- D_novemcinctus300099 TGAGCC--CCGTGAGGATAAGTAA--CTCTGAGGAGAC------------ D_melanogaster300048 TGAGCT--CATAACCGTGCAGAAAATTGT--AAACTGAAA---------- E_europaeus300186 CGAGAT--CCATGAGGATAAAACA--CTCTGAGGAGAC------------ E_europaeus300242 CGAGAT--CCATGAGGATAAGACA--CTCTGAGGAAAA------------ E_europaeus300418 CGAGAT--CCATGAGGATAAGACA--CTCTGAGGAGAC------------ F_catus300032 TGAGCT--CCGTGAGGATAAGACA--CTCTGAAGAGAC------------ G_gorilla301037 TGAGCT--CCGTGAGGATAAGTAA--CTCTGAGGAGAT------------ H_sapiens300169 TGAGCT--CCGTGAGGATAAATAA--CTCTGAGGAGA------------- M_mulatta300220 TGAGCT--CCGTGAGGATAAGTGA--CTCTGAGGAGAT------------ M_murinus300395 TGAGTT--CCGTGAGGATAAGTAA--CTCTGAGGAGAC------------ M_musculus300709 TGATATATCTGTGAGGATAAGTAA--CTCTGAGGAGGC------------ O_sativa300116 TGATTC--TTGCGGGAATGATCGCTTGATTCAAAGAACATCTAAGGGACT O_sativa300117 TGATTC--TTGTGTATATGATCGCTTGATTCAAAGAACATCTAAGGGACT O_sativa300118 TGATTC--TTGCGGATACGATCGCTTGAT-CAAAGAACATCTAAGGGACT O_sativa300119 TAATTA--TTGCGGATATGATTGCTTAATTCAGAGCACATCTAAGGGACT O_sativa300003 TGACTC--CTGCGGAGATGATCGCATGGT-CAAAGAACATCTAAGGGACT O_garnettii300570 TGATCT--CCATGAGGATAAGTAA--CTCTGAGGAGAC------------ P_troglodytes300396 TGAGCT--CTATGAGCATAAGTAA--TTCTGAGGAAAT------------ P_troglodytes300463 TGAGCT--CCGTGAGGATAAGTAA--CTCTGAGGAGAT------------ P_pygmaeus300536 TGAGCT--CCGTGAGGATAAGTAC--CTCTGAGGAGAT------------ R_norvegicus300380 TGATCT--CTGTGAGGATAAGTAA--CTCTGAGGAGGC------------ S_cerevisiae300046 TGAACT--TTTCGAAGTTTTGCAGATAAC--AATATTGCTTTTTTTCTCT S_araneus300242 TGAGTT--CCGTGAGGAT----GGAAAGCTCTGAGGAGAT---------- S_tridecemlineatus300198 TGAACT--CCGTGAGGATAAGTAA--CTCTGAGGAGAC------------ T_nigroviridis300123 TGAAAA--CTGTGA----TTGCAACTATT--AAATCTGATG--------- T_aestivum300103 TGATTC--TTGCGGAAATGATCGCACAGTTCAGAGAACATCTAAGGGACT T_aestivum300104 TGATTC--TTGCGAGCATGATCGCTTGATTCAAAGAACATCTAAGGGACT T_aestivum300105 TGATTC--TTGCGGAAATGATTGCACAGTTCAAAGAACATCTAAGGGACT T_aestivum300106 TGATTC--TTGCGAGCATGATCGCTTGATTCAAAGAACATCTAAGGGACC T_aestivum300107 TGATTC--TTGCAGGAATGATCGCACGATTCAAAGAACATCTAAGGGACT T_aestivum300395 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_aestivum300012 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_aestivum300013 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_aestivum301270 TTATTC--TTGCGGGAATAATCGGAAGATTCAAATCACATCCAAGGGATT T_aestivum300015 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300290 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300136 TGATTC--TTGCGGAAATGATCGCACAGTTCAAAGAACATCTAAGGGACT T_dicoccoides300137 TGATTC--TTGCGGAAATGATCGCACAATTCAAAGAACATTTAAGGGACT T_dicoccoides300138 TGATTC--TTGCGAGCATGATCGCTTGATTCAAAGACCATCTAAGGGACT T_dicoccoides300139 TGGTTC--TGGCGAGCATGATCGCTTGATTCAAAGAACATGTAAGGGACT T_dicoccoides300140 TGATTC--TTGCGGAAATGATCGCACAGTTCAAAGAACATCTAAGGGACT T_dicoccoides300141 TGCTTC--TTGCGAGCATGATCGCTTGATTCAAAGAACATCTAAGGGACC T_dicoccoides300289 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGGCT T_dicoccoides300147 TGATTC--TTGCGGGAGTGATCACACTATTCGAAGAACACCTGATGGACT T_dicoccoides300228 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300232 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300234 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCCAAGGGACT T_dicoccoides300288 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300098 TGACTC--CTGCGGTAATGATCGCATGGC-AAAAGAACATCTAAGGGACT T_dicoccoides301047 TTATTC--TTGTGGGAATAATTGGAAGATTCAAATCACATCCAAGGGATT T_dicoccoides301050 TTATTC--TTACGGGAATAATCAGAAGATTCAAATCACATCCAAGGGATT A_tauschii300011 GAGTTGTT- A_tauschii300012 GAGTCCTT- A_tauschii300013 GAGTTATA- A_tauschii300018 GAGTTGTT- A_tauschii300019 GAGTCGGC- A_tauschii300020 GAGT-GTGC A_tauschii300032 TATTTGTC- A_tauschii300391 GAGTTGTC- A_tauschii300374 GAGTTGTC- A_tauschii300132 GAGTTGTT- A_tauschii300226 GAGTTGTC- A_tauschii300400 GAGTTGTC- A_tauschii300492 GAGTTGTC- A_thaliana300032 GAGT----- A_thaliana300033 GAGT----- C_elegans300120 --------- C_familiaris300100 --------- D_novemcinctus300099 --------- D_melanogaster300048 --------- E_europaeus300186 --------- E_europaeus300242 --------- E_europaeus300418 --------- F_catus300032 --------- G_gorilla301037 --------- H_sapiens300169 --------- M_mulatta300220 --------- M_murinus300395 --------- M_musculus300709 --------- O_sativa300116 GAGTTATC- O_sativa300117 GAGTTGTC- O_sativa300118 GAGTAATA- O_sativa300119 GAGTTGCC- O_sativa300003 GAGTTGTC- O_garnettii300570 --------- P_troglodytes300396 --------- P_troglodytes300463 --------- P_pygmaeus300536 --------- R_norvegicus300380 --------- S_cerevisiae300046 GACT----- S_araneus300242 --------- S_tridecemlineatus300198 --------- T_nigroviridis300123 --------- T_aestivum300103 GAGTTGTT- T_aestivum300104 GAGTCCTT- T_aestivum300105 GAGTTGTT- T_aestivum300106 GAGTCGGC- T_aestivum300107 GAGT-GTGC T_aestivum300395 GAGTTGTC- T_aestivum300012 GAGTTGTC- T_aestivum300013 GAGTTGTC- T_aestivum301270 GAGTTATA- T_aestivum300015 GAGTTGTC- T_dicoccoides300290 GAGTTGTC- T_dicoccoides300136 GAGTTGTT- T_dicoccoides300137 GAGTTGTT- T_dicoccoides300138 GAGTCGTT- T_dicoccoides300139 GAGTCGTT- T_dicoccoides300140 GAGTTGTT- T_dicoccoides300141 GGGTGGGC- T_dicoccoides300289 GAGTTGTC- T_dicoccoides300147 GAGT-GTAC T_dicoccoides300228 GAGTTGTC- T_dicoccoides300232 GAGTTGTC- T_dicoccoides300234 GAGTTGTC- T_dicoccoides300288 GAGTTGTC- T_dicoccoides300098 GAGTTGTC- T_dicoccoides301047 GAGTTATA- T_dicoccoides301050 GAGTTGTA-