Family: SNORA55

CLUSTAL W (1.83) multiple sequence alignment C_familiaris300432 --GCACCTGAATCTTTCCCATTCTTTGC-TGCTCTGTGCTGGTGTGGGGA C_porcellus300953 --GCACCC-AATCTTTCCCATTCC-TGC-TGCTTTGTGCTGGCCTGGGGA D_rerio300236 ---GCACTTCTGCAAACCCTGTCCTTCTGTGTCAGTGCTGGGCACGGGTT D_rerio300237 ---GCACTACAGCAAACCATTTCCTGCTTCTTCACAGCTGGATATGGGTT D_novemcinctus300268 --GCACCTGAATCTTTCCCATTCCCTGC-TGCTTTGTGCTGGTGTGGGGA E_telfairi300737 --GCACCTGAATCTTTCCCATTCCGGAC-TGCCTCGTGCTGGTGTGGGGA E_caballus300289 --GCACCTGAATCTTTCCCATTCTTTGC-TGCTTTGTGCTGGTGTGGGGA E_europaeus300208 ---TGCATGAATCTTTTCCACTCCTTGC-TGTTTTGTGCAGGTGTGAGGA E_europaeus300223 --GCACCTGAATCTTTCCCATTCCTTGC-TGCTTCATGCAGGTGTGGGGA E_europaeus300424 --GCACCTGAATCTTTCCCATTCCTTGC-TGCTTCATGCAGGTGTGGGGA E_europaeus300484 --GCACTTGAATCTTTCCTATTCCTTGC-TGCTCAGTGCAGGTATGAGGA E_europaeus300561 --GCACCTGAATCTTTCCCACTCCTTGC-TCCTGCATGTAGGAGTGGGGA E_europaeus300608 --GCACCTGAATCTTTCCCATTCCTTGC-TGTTTCGTGCAGGCATGGGGA F_catus300300 --GCACCTGAATCTTTCCCATTCTTTGC-TGCTTTGTGCTGGTGTGGGGA G_gallus300065 -------------------------------------------------- G_gallus300067 -------------------------------------------------- G_gorilla300438 --GCACCTGAATCTTTCCCATTCCTTGC-TGCCTCGTGCTGGTGTGGGGA H_sapiens300660 GAGCACCTGAATCTTTCCCATTCCTTGC-TGCCTCGTGCCGGTGTGGGGA L_africana300470 --GCACCTGAATCTTTCCCATTCTCTGC-TGCCTCGTGCTGGTGTGGGGA M_mulatta300577 --GCACCTGAATCTTTCCCATTCCTTGC-TGCCTCGTGCCGGTGTGGGGA M_murinus300385 --GTACCTAAATCTTACCCATTTCTTGC-TGCTTCGTGCTGCTGTGGAGA M_domestica300161 --GCACCTGCATCTTTCCCATTCTTGGC-TGCTTTGTGCCTGTCTGGGGA M_musculus300428 ---GCACTAAATCTTTCCCAGGCCTGCT--GCTTGGTGCCGGTCTGGGGA M_musculus300490 --------------TTCCCAGGCCTGCT--GCTTGGTGCCAGTCTGGGGA M_musculus300629 --------ACATTAAACTAACAAAACCTGAAAGATGGAT-GTAATGGGGA M_musculus300862 ---GCACTAAATCTTTCCCAGGCCTGCT--GCTTGGTGCCGGTCTGGGGA M_musculus300959 ---GCACTAAATCTTTCCCAGGCCTGCT--GCTTGGTGCCGGTCTGGGGA M_musculus300960 ---GCACTAAATCTTTCCCAGGCCTGCT--GCCCGGTGCCGGTCTGGGGA M_lucifugus300773 --GCACCTGAATCTTTCCCATTCTTTGC-TGCTTCGTGCTAGTGTGGGGA M_lucifugus300710 --GCACCTGAATCTTTCCCATTCTTTGC-TGCTTCGTGCTAGTGTGGGGA O_anatinus304010 --GCACCTAAATCTTTCCCACTCCT-GT-GACCCCGTGCGGGAGTGGTGA O_anatinus304011 --GCACCTGAATCTTTCCCATGCCTTGC-TGGGCAGTGTGGGTTTGGGGA O_anatinus304012 --GCG-TTGGATTGTTTCCGCCCTCTAC-CGTGACGTGAGAGTCTGAGGA O_anatinus303753 --GCG-TTGGATTGTTTCCGCCCTCTAC-CGTGACGTGAGAGTCTTAGGA O_cuniculus300405 --GCACCTGAGTCTTTCCCATTCCCTGC-TGCTCTGTGCTGGTGTGGGGA O_garnettii300623 --GCACCTATATCTTTCCCATTCCTTGC-TGATTCGTGCTGGTGTGGGGA P_troglodytes300520 --GCACCTGAATCTTTCCCATTCCTTGC-TGCCTCGTGCCGGTGTGGGGA P_pygmaeus300598 --GCACCTGAATCTTTCCCATTCCTTGC-TGCCTCGTGCCGGTGTGGGGA R_norvegicus300179 ---------CCACACTCCCAGGCCTGCT-TGCTTGGTGCTGGTCTGGGGA R_norvegicus300180 --------GAAGCTTCCTAGCCTGGTTAAGATTTTAACCAGCTCTGGGGA R_norvegicus300272 ----------------GTATAAAGAAATCCATTTTCTGCCGGTCTGGGGA R_norvegicus300914 --GCACTCAAATCTTTCCCAGGCCTGCT--GCTTGGTGCCGGTCTGGGGA R_norvegicus300915 --GCACTCAAATCTTTCCCAGGCCTGCT-TGCTTGGTGCTGGTCTGGGGA R_norvegicus300944 --GCACTCAAATCTTTCCCAGGCCTGCT--GCTTGGTGCCAGTCTGGGGA S_araneus300136 --GCACCTAAATCTTTCCCATTCCTTGC-TGCTTCGTGCTGGCATGGGGA S_araneus300327 --GCACCTGAATCTTTCCCATTCCT-GC-TGCTTCATGCTGGTGTGGGGA S_araneus300367 --GCATTTAGATCTTTCCCATTCCTTTC-TGTTTCATGCTGGTGTGGGGA S_araneus300678 --ACACCCAAATCCTGACCATTCCTTGA-TGCTTTGTGCTGGTGTGGGGA S_araneus300702 --GCACCTAAATCTTTCCCATTCCTTGC-TGCTTCGTGCTGGCATGGGGA S_araneus300896 --GCACCTGAATCTTTCCCATTCCTTGC-TGCTTTGTGCTGGCATGGGGA S_araneus300918 --GCACCTGAATCTTTCCCATTCCT-GC-TGCTTCATGCTGGCGTGGGGA S_araneus301018 --GCACCTAAATCTTTCCCATCCCTTGC-TGCTTCGTGCTGGTGTGGGGA S_tridecemlineatus300301 --GCACCC-GATCTTTCCCATTCC-TGC-TGCTTCGTGCTGGTCTGGGGA T_nigroviridis300017 -GCACCTCTCAGCAACCCAGTGGACTCTGCTGAGTGGTCAGATTGGGTAT T_belangeri300342 --GCACCGGAATCTTTCCCGCTCCTTGC-TGCCTCGTGCTGGTGTGGGGA V_komodoensis300071 --GCACCTGAATCTTTCCCATGCTTTGTAGAACAAGTGCAGGCCTGGGGA C_familiaris300432 CAGACGGTGCAACAGTACAA-GCAGAGGAAATCCAGACAGGTTGTT-TTC C_porcellus300953 CAGTGGGTGCTACAACATGA-GCAGAGGATATCCAGACGGGTTGCT-TTC D_rerio300236 TAAAA-GTGCTAAAGTACCT--CAGAGTGCATCCAGACAAGTC-----TC D_rerio300237 AAAACTGTGCAATAGTAACT--CATAGTGTATCCAGATGAGTC-----TC D_novemcinctus300268 CAGATGGTGCTACAGTATGA-GCAGAGGAAATCCAGACAGGTTGTT-TTC E_telfairi300737 CAGATGGTGCTACAGCATGA-GCAGAGGGAATCCAGACGGGTGG-T-TTC E_caballus300289 CAGATGGTGCTACAGTATGA-GCAGAGGAAATCCAGACGGGTTGTT-TTC E_europaeus300208 CAGAT-----------ATGA-GCAGAAGAAATCCAGACAGGTTGTT-TTC E_europaeus300223 CAGATGGTGCTACAGTATGA-GCAGAGTACATCCAGACAGGTTGTT-TTC E_europaeus300424 CAGATGGTGCTACAGTATGA-GCAGAGTACATCCAGACAGGTTGTT-TTC E_europaeus300484 CACATGGTGGTACAACTGGA-GCAGAGGAAATACAGACAGGTGCTT-GTC E_europaeus300561 CAGATGGTGCTATAACATAG--CAGAGGAAATCCAGATGGG---TT--TC E_europaeus300608 CAGATGGTGCTACAGTATGA-GCAGAGGAAATCCAGACAGGTTCTT-TTC F_catus300300 CAGATGGTGCAACAGTATGA-GCAGAGGAAATCCAGACGGGTTGTT-TTC G_gallus300065 -------------------------------------------------- G_gallus300067 -------------------------------------------------- G_gorilla300438 CAGATGGTGCTACAGAATGA-GCAGAGGAAATCCAGACAGGTTGTT-TTC H_sapiens300660 CAGATGGTGCTACAGAATGA-GCAGAGGAAATCCAGACAGGTTGTT-TTC L_africana300470 CAGACGGTGCTACAACACGA-GCAGAGGAAATCCAGACGGGTTG-T-TCG M_mulatta300577 CAGATGGTGCTACAGAATGA-GCAGAGGAAATCCAGACAGGTTATT-TTC M_murinus300385 CAGATGGTTCTACGGTATGA-GCAGAGGAAATCCAGAAAGGTTGCT-TTT M_domestica300161 CAGGTGGTGCTACAGTACAA-GCAGAGGAAATCCAGACAGGTTATC-TTC M_musculus300428 CAGACAGTGCTATACTAGCG--CAGAGGAAATCCAGGCAAGCCATT--TC M_musculus300490 CAG----------------------AGGAAATCCAGACGGGTTGTT--TC M_musculus300629 CAGACAGTGCTATACTAGAG--CAGAGGAAATCCAGATGGGTCGTT--TC M_musculus300862 CAGACAGTGCTATACTAGAG--CAGAGGAAATCCAGACAGGTCGTT--TC M_musculus300959 CAGACAGTGCTATACTACAG--CAGAGGAAATCCAGACGGGTCGTT--TC M_musculus300960 CAGACAGTGCTATACTACAG--CAGAGGAAATCCAGACGGGTCGTT--TC M_lucifugus300773 CAGATGGTGCCACAGTA-AA-GCAGAGGAAATCCAGACGGGTTGTT-TTT M_lucifugus300710 CAGATGGTGCCACAGTA-AA-GCAGAGGAAATCCAGACGGGTTGTT-TTT O_anatinus304010 CAAATGGTGCTACAGAATGG--CAGAGGAAATCCAGACAGGTCGCTACAC O_anatinus304011 CAGATGGTGCTACACTAGCT-GCAGAGGAAATCCAGGCAGGTTACT-TTC O_anatinus304012 TGGGAGATGTTACAGAACCA-GCAGGGGAAATCCAGATGGGTGATC-TTC O_anatinus303753 TGGGAGATGTTACAGAACCA-GCAGGGGAAATCCAGATGGGTGATC-TTC O_cuniculus300405 CGGATGGTGCCACAGCGTGG-GCAGAGGAAATCCAGACGGGCTGTT-TTC O_garnettii300623 CAGATGGTGCTATAGCATCA-GCAGAGGAAATCCAGACAGGT---T-TTC P_troglodytes300520 CAGATGGTGCTACAGAATGA-GCAGAGGAAATCCAGACAGGTTGTT-TTC P_pygmaeus300598 CAGATGGTGCTACAGAATGA-GCAGAGGAAATCCAGACAGGTTGTT-TTC R_norvegicus300179 CAGGCAGTGCTATAGTAGAG--CAGAGGAAATCCAGACGGGTCGTT--TC R_norvegicus300180 CAGACGGTGCTACAGTAGAG--AAGAGGAAATTCAGACGGGTCGTT--TC R_norvegicus300272 CAGGCAGTGCTACAGTAGAG--CAGAGGAAATCCAGACGGGTTGTT--TC R_norvegicus300914 CAGGCAGTGCAATAGTAGAG--CAGAGGAAATCCAGACGGGTTGTT--TC R_norvegicus300915 CAGGCAGTGCTATAGTAGAG--CAGAGGAAATCCAGACGGGTCGTT--TC R_norvegicus300944 CAGGCAGTGCAATAGTAGAG--CAGAGGAAATCCAGACGGGTCGTT--TC S_araneus300136 CAGATGGTGCTATAGTACAA-GCAGAGGAAATCCAGATGGGTTGTT--TC S_araneus300327 CAGATGGTGCAACAGTACAA-GCAGAGTAATTCCAGATGGGTCCTT--TC S_araneus300367 CAGATGGTGCTACAGTACCA-GCAGAGAAAATCCAGACAGATCA-T-ACC S_araneus300678 CAGATGGTGCGACAGTACCA-GCAGTGGATAACCAGACGGGACA-T-TTC S_araneus300702 CAGATGGTGCTATAGTACAA-GCAGAGGAAATCCAGATGGGTTGTT--TC S_araneus300896 CAGATGGTGCTACAGTACAAAGCAGAGGAAATCCAGATGGGCCATT--TC S_araneus300918 CAGATGGTGCAACAGTACAA-GCAGAGTAAATCCAGACGGGTCGTT--TC S_araneus301018 CAGATGGTGCTACAATACCA-GCAGAGGAAATCCAGATGGGTCA-T-TTC S_tridecemlineatus300301 CAGATGGTGCTACACTATGA-GCAGAGGATATCCAGACGGGTTGTT-TTC T_nigroviridis300017 CAGATGGTGCTAGAACGACT--CACTGTGTATCCAGATGGACC-----TC T_belangeri300342 CAGGTGGTGCCACAGTGTGA-GCAGAGGATATCCAGACGGGCCGT----C V_komodoensis300071 CATGTGGTGCTAAAGCAACG--CAGAGAAAATCCAGACAAGTCACC-TTC C_familiaris300432 CATTTGTCTT------GGGGCCTGTCTCTACGACTCT-GCCACACCT C_porcellus300953 CATTTGTCTT------GGGGCCTGTCTCTACAACTCT-GCCACATTG D_rerio300236 CTCTTCTATT------GGCGCTTGTCTCTACAAACTTTGAAACAAGC D_rerio300237 CTCTTCTGTT------GGAACTTGTCTCTACAAACTATGATACATGA D_novemcinctus300268 CATTTGCCTT------GAGGCCTGTCTCTACAACTCT-GCCACAGTT E_telfairi300737 CATTTGTCTT------GGGGCCTGTCTCTACAACTCT-GCCACACTC E_caballus300289 CATTTGTCTT------GGGGCCTGTCTCTACAACTCT-GCCACACTC E_europaeus300208 CATTTGTCTT------GGGACCTGTCTCTGTAATTCT-GCCACACTA E_europaeus300223 CATTTGTCTT------GGGACCTGTCCCTACAACTCT-GCCACAGTT E_europaeus300424 CATTTGTCTT------GGGACCTGTCCCTACAACTCT-GCCACAGTT E_europaeus300484 CATTTGTCTT------GGTACTTGTCTTTACCACTCC-GCCACACTT E_europaeus300561 CA-TTGTCTT------GAAACCTGTCTCTACAACTCTCGCCACACTT E_europaeus300608 CATTTGTCTT------GGGACCTGTCTCTACAACTCT-GCCACATTA F_catus300300 CATTTGTCTT------GGGGCCTGTCTCTACAACTCT-GCCACACAC G_gallus300065 ----------------------------------------------- G_gallus300067 ----------------------------------------------- G_gorilla300438 CATTTGTCTT------GGGGCCTGTCTCTACAGCTCT-GCCACATTT H_sapiens300660 CATTTGTCTT------GGGGCCTGTCTCTACAGCTCT-GCCACATTT L_africana300470 CATTTGTCTT------GGGGCCTGTCTCTACAACTCT-GCCACACTC M_mulatta300577 CATTTGTCTT------GGGACCTGTCTCTACAGCTCT-GCCACATTT M_murinus300385 CATTTATCTT------GGAGCCTGTCTCTACAGCTCT-GCCACATTT M_domestica300161 TGTTTACTTT------GGGGCTTGTCTCTACAACTCT-GCCACACTT M_musculus300428 CATCTGCCCT------GGGGCCTGTCTCTACAACTCT-GACACACTC M_musculus300490 CATCTGTCCT------GAGGTGTGTCTCTACAACTCT-GCCACACTT M_musculus300629 CATCTGCCCT------GGGGCCTGTCTCTACAACGCT-GCCACACTC M_musculus300862 CATCTGCC-T------GGGGCCTGTCTCTACAACTCT-GCCACACTC M_musculus300959 CATCTGCCCT------GGGGCCTGTCTCTACAACTCT-GCCACACTC M_musculus300960 CATCCGCCCT------GGGGCCTGTCTCTACAACTCT-GCCACACTT M_lucifugus300773 CATTTGTCTT------GCGGCCTGTCTCTACAGCTCT-GCCACACTT M_lucifugus300710 CGTTTGTCTT------GCGGCCTGTCTCTACAGCTCT-GCCACACTT O_anatinus304010 CAATCATCCA------GGCACCTGTCCCTACAACTCT-GCAACATGT O_anatinus304011 CATTTACATT------GCAACTTGCCTCTACAACTCT-GCCACATTT O_anatinus304012 CACCAGAGATAGAGATAGCCCTCATCTCTACACCTCT-GCCATAACT O_anatinus303753 CACCAGAGATAGAGATAGCCCTCATCTCTACACCTCT-GCCATAACT O_cuniculus300405 CATTCACCTT------GGAGCCTGTCTCTACAGCTCT-GCTACATTT O_garnettii300623 CATTTGTCTT------GGGGCCTGTCTCTACAACTCT-GCCACATTT P_troglodytes300520 CATTTGTCTT------GGGGCCTGTCTCTAGAGCTCT-GCCACATTT P_pygmaeus300598 CATTTGTCTT------GGGGCCTGTCTCTACAGCTCT-GCCACATTT R_norvegicus300179 CATCTGTCCT------GGGGGCTATCTCTACAACTCT-GCCACACTT R_norvegicus300180 CATCTGTTCT------GGGGCCTGTCTCTACAACTCT-GCTACGCTC R_norvegicus300272 CATCTGTCCT------GGGGCCTGTCTCTATAACTCC-GCCACACAT R_norvegicus300914 CATCTGTCCT------GGGGCCTGTCTCTACAACTCT-GCCACACTC R_norvegicus300915 CATCTGTCCT------GGGGCCTGTCCCTACAACTCT-GCCACACTT R_norvegicus300944 CATCTGTCCT------GGGGCCTGTCTCTACAACTCT-GCCACACAT S_araneus300136 CACTTGTCTT------GGGACCTGTCTCTACAACTCT-GCCACACTT S_araneus300327 CGTTTGTCTT------GGGGCTTGTCTCTACAGCTCT-GCCATACTT S_araneus300367 CATTTGTCTT------CAGGCCTATCTTTAC--TTCT-GCCACATTT S_araneus300678 CATTTGTTTTGC---TTGAGGCTGTCTCTACAACTCT-GCCACATTA S_araneus300702 CACTTGTCTT------GGGACCTGTCTCTACAACTCT-GCCACACTT S_araneus300896 CATTTGTTTT------GGAACCTGTCCCTACAACTCT-GCCACACTT S_araneus300918 CATTTTTCTT------GGGGCTTGTCTCTACAGCTCT-GCCATACTT S_araneus301018 CATTTGTCTT------GGGGCCTGTCTCTACAACTCT-GCCACATTT S_tridecemlineatus300301 CATTTGTCTT------GGGACCTGTCTCTACAACTCT-GCCACATTT T_nigroviridis300017 CCCCCTCTGT------GGAGCCTGTCTCTACAA-CTTTGAAACATTA T_belangeri300342 CATTTGCCTT------GGGGCCTGTCCCTACAACTCT-GCCACATTT V_komodoensis300071 CTCTTGTCGA----------CTTGTCTCTACGCCTTT-GCAACACTG