Family: SCARNA2

CLUSTAL W (1.83) multiple sequence alignment C_familiaris300222 ---ACTGAGGAGTGATGACAATAAAAGG-CCGAATTGCAGTGT-GCCCAT C_porcellus300097 ---AATTAGAAATAAATCCG-TGAAGAA-TGATGACACAGTGT-CCTGGT C_porcellus300215 ---GCTGAGGAATGATGACA-CAAAAGG-CCGAATTGCAGTGT-CCCCGT D_novemcinctus300423 ---ACTGAGGAATGATGACAATAAAAGG-CCGAATTGCAGTGCCTCCAAA E_telfairi300633 ---ACTGAGGAATGATGACAATAAAAGG-CCGGATTGCAGTGT-CTCCAT E_telfairi300877 ---ACTGAGGAGTGATGACAATAAAAGG-CCGAATTGCAGTGT-CTCCAT E_caballus300133 ---ACTGGGGAATGATGACAGTAAAAGG-CCGAATTGCAGTGT---CCTC E_europaeus300276 ---ACTGAGGAATGATGACAATAAAAGG-CCGAATTGCAGTGCCCCCAC- F_catus300204 ---ACTGAGGAGTGATGACAATAAAAGG-CCGAATTGCAGTGT-GCCCAT G_gorilla300593 ---ACTGAGGAATGATGACAAGAAAAGG-CCGAATTGCAGTGT-CTCCAT H_sapiens300430 ---ACTGAGGAATGATGACAAGAAAAGG-CCGAATTGCAGTGT-CTCCAT M_mulatta300405 ---ACTGAGGAATGATGACAAGAAAAGG-CCGAATTGCAGTGT-CTCCAT M_murinus300258 ---ACTGAGGAATGATGACACTAAAAGG-CCGAATTGCAGTGT-GTCCAT M_domestica300020 ---ACTGAGGAATGATGACATTAAAAGG-CCGAATTGCAGTGCCTTCCAT M_musculus300543 ---GCTGAGGAGTGATGACA-TAAAAGG-CCGAATTGCAGTGT-CTCCAT O_anatinus304354 ---ACTGAGGAATGATGACAATAAAAGG-CCGAATTGCAGTGC-TTCCAT O_cuniculus300130 ---ACTGAGGAATGATGACAATAAAAGG-CCGAATTGCAGTGT-CTCCGT O_cuniculus300312 ---ACTGAGGAATGATGACAATAAAAGG-CCGAATTGCAGTGT-CTCCGT O_garnettii300566 ---ACTGAGGAATGATGACAATAAAAGG-CCGAATTGCAGTGT-CTCCAT P_troglodytes300281 ---ACTGAGGAATGATGACAAGAAAAGG-CCGAATTGCAGTGT-CTCCAT P_pygmaeus300141 ---ACTGAGGAATGATGACAAGAAAAGG-CCGAATTGCAGTGT-CTCCAT P_pygmaeus300142 ---ACTGAGGAATGATGACAAGAAAAGG-CCGAATTGCAGTGT-CTCCAT R_norvegicus300277 ---GCTGAGGAATGATGACAATAAAAGG-CCGAATTGCAGTGT-CTCCAT S_araneus300175 ---GCCGAGGAATGATGACAATAAAAGG-CCGAATTGCAGTGT--CTCCC S_tridecemlineatus300240 ---ACTGAGGAATGATGACAAGAAAAGG-CCGAATTGCAGTGT-CTCCCT T_nigroviridis300159 ---ACCTGGATGTGATGT-AACAAAAGG-CCGAAT-GAAGCTCCGCCCAC T_nigroviridis300160 CCTGCTGGGAGATGATGTGAACAAAAGG-CCGAATTAAAGCGCTGCCAGC T_belangeri300264 ---GCTGAGGAATGATGACAATAAAAGGGCCGAATTGCAGTGT-GTCCTA * * * ** ** C_familiaris300222 TAGCAGTTTGCTCTCT-GTGGGGTGCACGATGACAAAATCTCCGGAAGCG C_porcellus300097 CTACAGTTTGCTCTC--TGTGGGCACACGATGACAAAACCTCCTGCAGCG C_porcellus300215 CTACAGTTTGCTCTC--TGTGGGCTCACGGTGACAAAACTTCCTGAAGCG D_novemcinctus300423 TTGCAGTTTGCTCTCTATATGGATGCACGATGACAAAATCTCCTGAAGCG E_telfairi300633 AAGCAGTTTGCTCTCTGTGTGGATGCACGATGACAAAACCTCCTGAAGCG E_telfairi300877 A-GCAGTTTGCTCTCTATGTGGATGCACGATGACAAAACCTCCTGAAGCG E_caballus300133 CAGCAGTTTGCTCTCTTGTGGGGTACACGATGACAAAATCTCCTGAAGCG E_europaeus300276 CAGCAGTTTGCTCTCTTTGTGGATGCACGATGACAAAATCTCCTGAAGCG F_catus300204 CAGCAGTTTGCTCTCT-GTGGGGCGCACGATGACAAAATCTCCAGAAGCG G_gorilla300593 CAGCAGTTTGCTCTC--TGTGGGCACACGATGACAAAATATCCTGAAGCG H_sapiens300430 CAGCAGTTTGCTCTC--CATGGGCACACGATGACAAAATATCCTGAAGCG M_mulatta300405 CAGCAGTTTGCTCTC--TCTGGGCACACGATGACAAAATTTCCTGAAGCG M_murinus300258 CAGCAGTTTGCTCTCT----GGGCACACGATGACAAAATCTCCTGAAGCG M_domestica300020 AAGCAGTTTGCTCTCTGTATGGA-GCACAATGACAAAGTCTCCAGAAGCG M_musculus300543 CAACAGTTGGCTCTC----TGAGCACACGATGACAAAACCTCCTGAAGCG O_anatinus304354 AAGCAGTTTGCTCTCTACATGGA-GCACAATGACAAAGACTCCTGAAGCG O_cuniculus300130 TAACAGTTGGCTCTC--TGTGGGCACACGATGACAAAATCTCCCGAAGCG O_cuniculus300312 TAACAGTTGGCTCTC--TGTGGGCACACGATGACAAAATCTCCCGAAGCG O_garnettii300566 CAGCAGTTTGCTCTCTGTGTGGGCACACGATGACAAAACCTCCTGAAGCG P_troglodytes300281 CAGCAGTTTGCTCTC--CATGGGCACACGATGACAAAATATCCTGAAGCG P_pygmaeus300141 CAGCAGTTTGCTCTC--TGTGGGCACACGATGACAAAATATCCTGAAGCG P_pygmaeus300142 CAGCAGTTTGCTCTC--TGTGGGCACACGATGACAAAATATCCTGAAGCG R_norvegicus300277 CAACAGTTTGCTCTCCGTGTGGGCACACGATGACAAAACCTCCTGAAGCG S_araneus300175 CAGCAGTTGGCTCTC----TGGGTGCACGATGACAAAACCCCCCGAAGCG S_tridecemlineatus300240 TAGCAGTTTGCTCTC----TGGGTGCACAATGACAAAATCACCTGAAGCG T_nigroviridis300159 AGC-AGACTGTTCACAGTGGGTG-GAGCTGTGACAAAAA---TCGGACTG T_nigroviridis300160 AGCCAGTGTGGGCTTGCTGGG-G-GCGCCATGATAAAA----CCGGACTG T_belangeri300264 TAGCAGTTTGCTCTCT--CTGGGCACACGATGACAAAATCTCCTGAAGCG ** * * * * *** *** * * * C_familiaris300222 AACCACTGGTCTGACCTCAGT----- C_porcellus300097 AAACAGCAGGCTGACCTCAGC----- C_porcellus300215 AAACAGCGCTCTGACCTCAGC----- D_novemcinctus300423 AACCACTGGTCTGACCTCAGT----- E_telfairi300633 AACC-CTAGTCTGACCTCAGT----- E_telfairi300877 ACCC-TTAGTCTGACCTCAGT----- E_caballus300133 AACCACTGGTCTGACCTCAGT----- E_europaeus300276 AACCACTGTCCTGACCTCAGT----- F_catus300204 AATCACTGGTCTGACCTCAGT----- G_gorilla300593 AACCACTAGTCTGACCTCAGT----- H_sapiens300430 AACCACTAGTCTGACCTCAGT----- M_mulatta300405 AACCACTAGTCTGACCTCAGT----- M_murinus300258 AACTAGTGGTCTGACCTCAGT----- M_domestica300020 TACAACTAGTCTGACCTCAGT----- M_musculus300543 AGTCA-CTGTCTGACCTCAGT----- O_anatinus304354 AACTATTGATCTGACCTCAGT----- O_cuniculus300130 AACCACCGGTCTGACCTCAGT----- O_cuniculus300312 AACCACCGGTCTGACCTCAGT----- O_garnettii300566 ACCCACTGGTCTGACCTCAGT----- P_troglodytes300281 AACCACTAGTCTGACCTCAGT----- P_pygmaeus300141 AACCACTAGTCTGAACTCAGT----- P_pygmaeus300142 AACCACTAGTCTGACCTCAGT----- R_norvegicus300277 AGTCA-CTGTCTGACCTCAGT----- S_araneus300175 AACC-CCATTCTGACCTCGGC----- S_tridecemlineatus300240 ACCTACTGGTCTGACCTCAGT----- T_nigroviridis300159 AAGCGTGT-TCTGATCCGGGT----- T_nigroviridis300160 AAGCGTTCATCTGATCCCACGGCAGA T_belangeri300264 AATCTCTGGTCTGACCTCAGT----- **** * TC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT A_tauschii300226 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT A_tauschii300400 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT A_tauschii300492 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT A_thaliana300032 TGATT-----GCGGTAATGATCGCATTATT--ATGAACATCTAAGGGACT A_thaliana300033 TGATT-----GCGGTAATGATCGCATTATT--ATGAACATCTAAGGGACT C_elegans300120 CTATTAGTTCACTGAGGAAAATAGCAATCATGAGCCT------------- C_familiaris300100 TGATCT--CCGTGAGGATAAAAAAAACTCTGAGGAG-------------- D_novemcinctus300099 TGAGCC--CCGTGAGGATAAGTAA--CTCTGAGGAGAC------------ D_melanogaster300048 TGAGCT--CATAACCGTGCAGAAAATTGT--AAACTGAAA---------- E_europaeus300186 CGAGAT--CCATGAGGATAAAACA--CTCTGAGGAGAC------------ E_europaeus300242 CGAGAT--CCATGAGGATAAGACA--CTCTGAGGAAAA------------ E_europaeus300418 CGAGAT--CCATGAGGATAAGACA--CTCTGAGGAGAC------------ F_catus300032 TGAGCT--CCGTGAGGATAAGACA--CTCTGAAGAGAC------------ G_gorilla301037 TGAGCT--CCGTGAGGATAAGTAA--CTCTGAGGAGAT------------ H_sapiens300169 TGAGCT--CCGTGAGGATAAATAA--CTCTGAGGAGA------------- M_mulatta300220 TGAGCT--CCGTGAGGATAAGTGA--CTCTGAGGAGAT------------ M_murinus300395 TGAGTT--CCGTGAGGATAAGTAA--CTCTGAGGAGAC------------ M_musculus300709 TGATATATCTGTGAGGATAAGTAA--CTCTGAGGAGGC------------ O_sativa300116 TGATTC--TTGCGGGAATGATCGCTTGATTCAAAGAACATCTAAGGGACT O_sativa300117 TGATTC--TTGTGTATATGATCGCTTGATTCAAAGAACATCTAAGGGACT O_sativa300118 TGATTC--TTGCGGATACGATCGCTTGAT-CAAAGAACATCTAAGGGACT O_sativa300119 TAATTA--TTGCGGATATGATTGCTTAATTCAGAGCACATCTAAGGGACT O_sativa300003 TGACTC--CTGCGGAGATGATCGCATGGT-CAAAGAACATCTAAGGGACT O_garnettii300570 TGATCT--CCATGAGGATAAGTAA--CTCTGAGGAGAC------------ P_troglodytes300396 TGAGCT--CTATGAGCATAAGTAA--TTCTGAGGAAAT------------ P_troglodytes300463 TGAGCT--CCGTGAGGATAAGTAA--CTCTGAGGAGAT------------ P_pygmaeus300536 TGAGCT--CCGTGAGGATAAGTAC--CTCTGAGGAGAT------------ R_norvegicus300380 TGATCT--CTGTGAGGATAAGTAA--CTCTGAGGAGGC------------ S_cerevisiae300046 TGAACT--TTTCGAAGTTTTGCAGATAAC--AATATTGCTTTTTTTCTCT S_araneus300242 TGAGTT--CCGTGAGGAT----GGAAAGCTCTGAGGAGAT---------- S_tridecemlineatus300198 TGAACT--CCGTGAGGATAAGTAA--CTCTGAGGAGAC------------ T_nigroviridis300123 TGAAAA--CTGTGA----TTGCAACTATT--AAATCTGATG--------- T_aestivum300103 TGATTC--TTGCGGAAATGATCGCACAGTTCAGAGAACATCTAAGGGACT T_aestivum300104 TGATTC--TTGCGAGCATGATCGCTTGATTCAAAGAACATCTAAGGGACT T_aestivum300105 TGATTC--TTGCGGAAATGATTGCACAGTTCAAAGAACATCTAAGGGACT T_aestivum300106 TGATTC--TTGCGAGCATGATCGCTTGATTCAAAGAACATCTAAGGGACC T_aestivum300107 TGATTC--TTGCAGGAATGATCGCACGATTCAAAGAACATCTAAGGGACT T_aestivum300395 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_aestivum300012 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_aestivum300013 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_aestivum301270 TTATTC--TTGCGGGAATAATCGGAAGATTCAAATCACATCCAAGGGATT T_aestivum300015 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300290 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300136 TGATTC--TTGCGGAAATGATCGCACAGTTCAAAGAACATCTAAGGGACT T_dicoccoides300137 TGATTC--TTGCGGAAATGATCGCACAATTCAAAGAACATTTAAGGGACT T_dicoccoides300138 TGATTC--TTGCGAGCATGATCGCTTGATTCAAAGACCATCTAAGGGACT T_dicoccoides300139 TGGTTC--TGGCGAGCATGATCGCTTGATTCAAAGAACATGTAAGGGACT T_dicoccoides300140 TGATTC--TTGCGGAAATGATCGCACAGTTCAAAGAACATCTAAGGGACT T_dicoccoides300141 TGCTTC--TTGCGAGCATGATCGCTTGATTCAAAGAACATCTAAGGGACC T_dicoccoides300289 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGGCT T_dicoccoides300147 TGATTC--TTGCGGGAGTGATCACACTATTCGAAGAACACCTGATGGACT T_dicoccoides300228 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300232 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300234 TGACTC--CTGTGGAAATGATCGCATGGT-CAAAGAACATCCAAGGGACT T_dicoccoides300288 TGACTC--CTGCGGAAATGATCGCATGGT-CAAAGAACATCTAAGGGACT T_dicoccoides300098 TGACTC--CTGCGGTAATGATCGCATGGC-AAAAGAACATCTAAGGGACT T_dicoccoides301047 TTATTC--TTGTGGGAATAATTGGAAGATTCAAATCACATCCAAGGGATT T_dicoccoides301050 TTATTC--TTACGGGAATAATCAGAAGATTCAAATCACATCCAAGGGATT A_tauschii300011 GAGTTGTT- A_tauschii300012 GAGTCCTT- A_tauschii300013 GAGTTATA- A_tauschii300018 GAGTTGTT- A_tauschii300019 GAGTCGGC- A_tauschii300020 GAGT-GTGC A_tauschii300032 TATTTGTC- A_tauschii300391 GAGTTGTC- A_tauschii300374 GAGTTGTC- A_tauschii300132 GAGTTGTT- A_tauschii300226 GAGTTGTC- A_tauschii300400 GAGTTGTC- A_tauschii300492 GAGTTGTC- A_thaliana300032 GAGT----- A_thaliana300033 GAGT----- C_elegans300120 --------- C_familiaris300100 --------- D_novemcinctus300099 --------- D_melanogaster300048 --------- E_europaeus300186 --------- E_europaeus300242 --------- E_europaeus300418 --------- F_catus300032 --------- G_gorilla301037 --------- H_sapiens300169 --------- M_mulatta300220 --------- M_murinus300395 --------- M_musculus300709 --------- O_sativa300116 GAGTTATC- O_sativa300117 GAGTTGTC- O_sativa300118 GAGTAATA- O_sativa300119 GAGTTGCC- O_sativa300003 GAGTTGTC- O_garnettii300570 --------- P_troglodytes300396 --------- P_troglodytes300463 --------- P_pygmaeus300536 --------- R_norvegicus300380 --------- S_cerevisiae300046 GACT----- S_araneus300242 --------- S_tridecemlineatus300198 --------- T_nigroviridis300123 --------- T_aestivum300103 GAGTTGTT- T_aestivum300104 GAGTCCTT- T_aestivum300105 GAGTTGTT- T_aestivum300106 GAGTCGGC- T_aestivum300107 GAGT-GTGC T_aestivum300395 GAGTTGTC- T_aestivum300012 GAGTTGTC- T_aestivum300013 GAGTTGTC- T_aestivum301270 GAGTTATA- T_aestivum300015 GAGTTGTC- T_dicoccoides300290 GAGTTGTC- T_dicoccoides300136 GAGTTGTT- T_dicoccoides300137 GAGTTGTT- T_dicoccoides300138 GAGTCGTT- T_dicoccoides300139 GAGTCGTT- T_dicoccoides300140 GAGTTGTT- T_dicoccoides300141 GGGTGGGC- T_dicoccoides300289 GAGTTGTC- T_dicoccoides300147 GAGT-GTAC T_dicoccoides300228 GAGTTGTC- T_dicoccoides300232 GAGTTGTC- T_dicoccoides300234 GAGTTGTC- T_dicoccoides300288 GAGTTGTC- T_dicoccoides300098 GAGTTGTC- T_dicoccoides301047 GAGTTATA- T_dicoccoides301050 GAGTTGTA-